Protein Info for mRNA_3665 in Rhodosporidium toruloides IFO0880

Name: 12033
Annotation: HMMPfam-CorA-like Mg2+ transporter protein-PF01544,SUPERFAMILY--SSF143865,SUPERFAMILY--SSF144083

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 737 transmembrane" amino acids 644 to 666 (23 residues), see Phobius details amino acids 685 to 707 (23 residues), see Phobius details PF01544: CorA" amino acids 426 to 549 (124 residues), 27.6 bits, see alignment E=9.2e-11 amino acids 587 to 701 (115 residues), 61.1 bits, see alignment E=6e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (737 amino acids)

>mRNA_3665 HMMPfam-CorA-like Mg2+ transporter protein-PF01544,SUPERFAMILY--SSF143865,SUPERFAMILY--SSF144083 (Rhodosporidium toruloides IFO0880)
MASLHHNPALRSGRPSPSLAHRRSSSSGHFHRREIDRPFDDPPTSSDTQDEAGRTQAGAS
GAGGCLGDESTLGGTDVHGQQSRESQLPLVEGGDVSEHFLKPPQVVERPDLHNRTSSQRL
QSVRAALVAANILSLGADTDWDSRPPGIDPRRVDIPDLRCKSVIQVAEWSKERAEFTVLT
NESVPSFLEAGRPDFAKVRWMHVNGLSWDVIKPLALHFNLHPLSLEDMLHSSSSASTRSK
VDYYRQHLFARVVVHRTLDQQPKVDLDAPEETLGISRSTTKALKGGAKERGAQLRDQFGF
HHHQRDEEAIVDSATHSRIGSHASGSATPDEAAQIIASTGTQSPLMAVHPKAYSQYRKNL
REAFKGVKRSREEGYRTLSHNRSGLATKWHGLTTKSKRRRKEEAQRAAARWTVATLTKDV
KVHIHVEQLSIFLFRDGTILSFSQDSGYHHQISQIFERIQSRDDLLRDSEDASFVLQALL
DVTADDALEIVDEFRETLTMLESRVLARPDMDDVRHLHILSSQLLLLKSTFTPLQLLLQA
IRSQDDAKAAAAFRIEALAGPSATANQATGDERDGEAEKAREKEKERVTDRAARKGFVSH
EAKVYLGDVMDHVDSVLSSLDLFSDLAENLIAFTFNNLSYSSNAYMQALSVVSIIFVPAT
FLSSYFGMNFSQGSFINDLDKGVRLFWAISLPVTFVTVFLFGWGYLVEIASRARRDILRM
YHQVEIRRSRSRKEKEL