Protein Info for mRNA_3694 in Rhodosporidium toruloides IFO0880

Name: 12062
Annotation: K18334 fucD L-fuconate dehydratase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 PF13378: MR_MLE_C" amino acids 206 to 447 (242 residues), 157.6 bits, see alignment E=1.9e-50

Best Hits

KEGG orthology group: None (inferred from 68% identity to cci:CC1G_02516)

Predicted SEED Role

"L-fuconate dehydratase (EC 4.2.1.68)" in subsystem L-fucose utilization temp (EC 4.2.1.68)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.2.1.68

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (480 amino acids)

>mRNA_3694 K18334 fucD L-fuconate dehydratase (Rhodosporidium toruloides IFO0880)
MTQDSFIASFTVEDLRFPTSLTGDGTDANNRECDYSAAYCTLRTNLGEVGYGLTFTIGRG
NDIVCAAVEQVAGKLMNMKTAELFSAAGLGRMWNYLLSDPQLRWIGPEKGVIHIATAAVV
NAVWDMYARHLKKPLWQVVAEFTPEEFVAATTFRYITDMITPEEALALLKEKEAGKAERL
AKLKAEGYPAYTTSVGWFGYPDEKVARLTREAIAQGFNHFKMKVGADVAMDQRRLALIRS
IIDDPKECEGRPVPSAESLVGKNAGPTGSVLMIDSNQVWDVREAIDYVKALKDANPWFIE
EPTAPDDILGHAEIRKQLKPYKIGVATGEHAHNRMVFKQLLAAKAIDVCQIDSCRLAGVN
EILGVLLMAAKKGVPVCPHAGGVGLTNYVVHLSIIDYLCVSGTKERNVLEYVDHLHEHFT
NPPSINSHGYYNIPSDPTEGYSIGMHEASKAAYVYPNGSYWTNDHAAARLVAIKNGYIKP