Protein Info for mRNA_3716 in Rhodosporidium toruloides IFO0880

Name: 12084
Annotation: K13348 MPV17 protein Mpv17

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details transmembrane" amino acids 51 to 71 (21 residues), see Phobius details amino acids 93 to 111 (19 residues), see Phobius details amino acids 143 to 165 (23 residues), see Phobius details PF04117: Mpv17_PMP22" amino acids 109 to 167 (59 residues), 80.4 bits, see alignment E=4.5e-27

Best Hits

Swiss-Prot: 47% identical to SYM1_CRYNB: Protein SYM1 (SYM1) from Cryptococcus neoformans var. neoformans serotype D (strain B-3501A)

KEGG orthology group: K13348, protein Mpv17 (inferred from 52% identity to lbc:LACBIDRAFT_255602)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (168 amino acids)

>mRNA_3716 K13348 MPV17 protein Mpv17 (Rhodosporidium toruloides IFO0880)
MANLLRAYNSALMRRPYATGMASAAFLFGAGDVLAQQGIEKRGADHDYMRTLRLAGYGGL
IFAPLITRVYGGIERIRFQSKVATTVARVGVDQFVLTPCVLTLFFTCQSLLEGKGFSEAR
NRIENKWWPTIQKNWGTWIPVQLINFSVVPLHLRLLVVNVVSLFWKCV