Protein Info for mRNA_3717 in Rhodosporidium toruloides IFO0880

Name: 12085
Annotation: K03979 obgE, cgtA GTPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 658 PF01018: GTP1_OBG" amino acids 56 to 164 (109 residues), 96.5 bits, see alignment E=1.3e-31 PF01926: MMR_HSR1" amino acids 352 to 518 (167 residues), 67.1 bits, see alignment E=1.5e-22

Best Hits

Predicted SEED Role

"GTP-binding protein Obg"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (658 amino acids)

>mRNA_3717 K03979 obgE, cgtA GTPase (Rhodosporidium toruloides IFO0880)
MLRTSLRPWHRPACWLRPYSTLPSLDPAPTPTSATAERKAKAKADWKRRAQGSNFVDTLR
VMVASGKGGSGGVAFHREKFVRRGPPAGGNGGVGGSVYLVASPSVSNLSHLGRTVKAGPG
GSGRGSWLGGARGEDAIIRVPVGTVVREIRQKSTDEEVLEQEKEERQELEWAYEANRIRM
EEAQAREIRWQKWKKRRDQAEKFGDPDTVEAWEELDEEPIAQHKLDALAKLRKALFVMYP
GAELEGHPSFLRTEHQLLSKMLSREIDMPASRVKGRFRRNRAWDEEEDDAPLYLDLVKPT
PIDDPILLVPGGQPGLGNPSFLTHEDRSPKYATRGGEGDRVIFELEVKSIGEVGLVGLPN
AGKSTLLRSLTSSAPRVASYAFTTLNPHHGTCIIWSDGTFSGPRAAPHTSDAAEISDTPS
TPQYFSAEKQHASRAERRKHLPADFPRRGDSERSEVLRFTMTDNPGLVEDSSLNVGLGHA
FLRHIERCSALVYVVDLSSPDPCGAIRSLRKELREYARMKEMKEGELEGRIRGVVANKAD
LFGPAEAEEQIEMGAGEADVDPAALEEARRKSAEDGRRKLGELMEYVRGMEKEEIEAGIR
SPEDPIWVVPISAKKRQNVPALVNKLAETVKKERARAAELAKAAGAAEAEDEEYEEDD