Protein Info for mRNA_3725 in Rhodosporidium toruloides IFO0880

Name: 12093
Annotation: K18168 SDHAF2, SDH5 succinate dehydrogenase assembly factor 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 198 PF03937: Sdh5" amino acids 104 to 176 (73 residues), 90.1 bits, see alignment E=3.5e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (198 amino acids)

>mRNA_3725 K18168 SDHAF2, SDH5 succinate dehydrogenase assembly factor 2 (Rhodosporidium toruloides IFO0880)
MLRSLVGQTRTLARPCTRSLAHSATRRARPSTRVCSDSSDERIHPALVKDPPVANPSSAT
DPWTIKTPPMPEPPKLDPSIKTMDDLVNSPHPEGRDHEETETLRKRLVYESRKRGILEMD
LILSTFAKERLPEMNDRQLREYDRFLTLPDWTIFYYVTGKAEAPEPWKSSQVLHELRHHS
ANKGKTVRRMPDLEVKKE