Protein Info for mRNA_3727 in Rhodosporidium toruloides IFO0880

Name: 12095
Annotation: SMART-Leucine rich repeat, ribonuclease inhibitor type-SM00368,SUPERFAMILY--SSF52047

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 487 PF13516: LRR_6" amino acids 80 to 99 (20 residues), 11.8 bits, see alignment (E = 1.1e-05) amino acids 179 to 201 (23 residues), 12.5 bits, see alignment (E = 6.8e-06)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (487 amino acids)

>mRNA_3727 SMART-Leucine rich repeat, ribonuclease inhibitor type-SM00368,SUPERFAMILY--SSF52047 (Rhodosporidium toruloides IFO0880)
MPFSSFRSPAVDLADFLRSLAVPRAFYSSSTPGTSSQQEHEWEILRARQGGTKRLDFFDH
DLSGPDGAVAVLRAVEKSPGVTALALSQNHLGDDGMRELLVGLKRLRSRDIGAHLELNLS
DCRLSDVSLHLITLHLLQPSPHPPSLKSLYLNYNNISLGCQSTLTSLPEFLGTTLSSPSC
TLRCLALTSNKSIGTSGLVNLLSHLRLAAGPSQLSELRLSVTGLSPEAAEPLTQWLEDPE
GGARLQILALNACGLGEAGVRRIARSVISGKACNLLHLECLANEEGDDERWQSVNEELLA
QEEGQDWSDWKERLEEAKRRNQQAYRETRLAALRLVGPARILFGGNAVEDEGGDERSFPF
LRLPIELQVHVLRCLMLLHPSSVAHLYPSTRSDAAPSSSTKSDNRLSAPLTESQFLRLIA
YSASRPTLTTSRRIALAHSSGSAPSLNGPSGTGSWKKQAEDRDAGDGWEEFFLRQTGCDR
FERASPL