Protein Info for mRNA_3760 in Rhodosporidium toruloides IFO0880

Name: 12128
Annotation: K10746 EXO1 exonuclease 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 331 PF00752: XPG_N" amino acids 1 to 95 (95 residues), 83.9 bits, see alignment E=9.7e-28 PF00867: XPG_I" amino acids 159 to 245 (87 residues), 82.8 bits, see alignment E=1.9e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (331 amino acids)

>mRNA_3760 K10746 EXO1 exonuclease 1 (Rhodosporidium toruloides IFO0880)
MGISGLLPLLSEMQKPSHVKEWKGKTVAVDAYVWLHRGAYGCAQDLALGKPTVKYVNYAM
HRVRMLKYYGVTPFLVFDGGLLPSKMGTEDEREKRVVLLPCLGAIAHGVLTCRRRSDALA
KGNAFLAEGKAGQARECFVKAVDVTPAMAYQLIKALPAEGVEYVVAPYEADPQLAYLEKS
GIVDAIVTEDSDLLVFGCRNVLFKMDGEGACVHISRDDFAKCREYNFAGWSDAEFRHMAI
LSGCDYLPSIHKLGLKTAYNLLRKYKKPEKVIQFVRLEGQLDVPRNYLDEFRRAELTFLH
QHVFDPRTRKLTHLHPLPPDKTCDDLPFIGP