Protein Info for mRNA_3761 in Rhodosporidium toruloides IFO0880

Name: 12129
Annotation: K20520 DBNL, ABP1 drebrin-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 651 PF00241: Cofilin_ADF" amino acids 13 to 132 (120 residues), 68.1 bits, see alignment E=1.3e-22 PF07653: SH3_2" amino acids 476 to 528 (53 residues), 42.1 bits, see alignment 1.1e-14 amino acids 597 to 651 (55 residues), 38.9 bits, see alignment 1.2e-13 PF00018: SH3_1" amino acids 478 to 523 (46 residues), 43.1 bits, see alignment 5.1e-15 amino acids 597 to 645 (49 residues), 54.3 bits, see alignment 1.6e-18 PF14604: SH3_9" amino acids 479 to 527 (49 residues), 51.9 bits, see alignment 1.1e-17 amino acids 598 to 649 (52 residues), 48.4 bits, see alignment 1.3e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (651 amino acids)

>mRNA_3761 K20520 DBNL, ABP1 drebrin-like protein (Rhodosporidium toruloides IFO0880)
MAGVSFSAPNLLQPYKEVLSGGQNDWALYTLVSNQGGFSTELKFTSSGSGGLEEIEDDFN
DGKVMYGFVRVKDANSSLPKFVLICWLGEGVPDSRKGLFPTHSAAVAKQLQGAHVTIQAR
SDSDITPSLIRKRVADSSGAKYSVHNEPAQRYVAPAPVSSSYVPVGRPQISQSKPAAPPT
PVGTSYDSKRNELADIRAAQAAKAAIPRPATAPSTSGMTASEPATPPPSHKPSAPIAAPS
PPIIPSAPPAAPPTSARASEQIPDRPGPVGSTWQPVSLPKPGKLGNRWQEAVSSSSDDSQ
GASKPKPTSGLTWSQRQELAKKQREEEEVQSRAAGEANLPPASMAKTAAVAAIGGTAAVG
LAAGAALGAGAGLAGAAAVGLGAAGVSSAVESKEDEEHEEQEEESSIPPPPPPPPAPPAP
PAPPAPPAPPAPPAPPAPPMRAAEPEPEPQPEAPTEAVANLSLGDLPPRTATSGQRARVL
FDYEAEEDNELSLVEGEIVDQVDQVDPGWWQASINGRTGLFPSNYVELIDEPQEEPAAAG
ADEADEPAASAGAPPPPPPPPPPPPPPPMATRPVEPESAPAPEPEPEPTADEGIVAVAAY
DYTAEEEGELTFTEGQRIVNIDRLGDEGWWQGRNVETGEVGVFPSNYVEEQ