Protein Info for mRNA_3775 in Rhodosporidium toruloides IFO0880

Name: 12143
Annotation: KOG2913 Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 201 transmembrane" amino acids 37 to 58 (22 residues), see Phobius details amino acids 64 to 86 (23 residues), see Phobius details amino acids 122 to 145 (24 residues), see Phobius details PF04193: PQ-loop" amino acids 65 to 123 (59 residues), 53.1 bits, see alignment E=1.1e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (201 amino acids)

>mRNA_3775 KOG2913 Predicted membrane protein (Rhodosporidium toruloides IFO0880)
MVVAQFGLLYVCLKYRPRDWDETRPYRIANFWQWPNFGAYLEFSAILVVVHSVLFLLLHR
FDFYVQLLGLIALGLEATLPIPQVLANYHAKSTAGFRPSVLAGWCGGDAFKLVYFFVTPN
PWQFRACAAFQFGVDIILCVQTFLFRHKTAADLRERAELRDTAGVAGAEALLESRGDRHE
EEDESEDEERRSGGYGREGRK