Protein Info for mRNA_3776 in Rhodosporidium toruloides IFO0880

Name: 12144
Annotation: HMMPfam-FHA domain-PF00498,HMMPfam-Ring finger domain-PF13639,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879,SUPERFAMILY--SSF57850

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 855 PF00498: FHA" amino acids 305 to 369 (65 residues), 47.8 bits, see alignment 2.3e-16 PF13639: zf-RING_2" amino acids 474 to 519 (46 residues), 30.5 bits, see alignment 5.6e-11 PF17123: zf-RING_11" amino acids 474 to 502 (29 residues), 35.6 bits, see alignment (E = 9e-13)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (855 amino acids)

>mRNA_3776 HMMPfam-FHA domain-PF00498,HMMPfam-Ring finger domain-PF13639,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879,SUPERFAMILY--SSF57850 (Rhodosporidium toruloides IFO0880)
MSPPTAVDILPRHLQSSASASSSSNASPAGTPPTSSQPALSSSFTRSPASSSIPLPSPGG
GTGTLPPGSPSSSSSNRFGLSLGFIQRRPRGWTTSSAQRSPNARGSPSASPATELPPSPG
GERPSSGYGFPALRRTLSKRTSSSNANDGARSRQRRSSSQPPVPAVGIVPPAGGEAGVGT
SSGESRTGAGNAEASTSASQQQQPPAFSPLAATTSLPNPPNAGSSTPSRAGTAPDSSATD
STQVQKIRLVPHLESSRSLHFEPIERDLAPFAIIRVGRFTDRHSHHGGSSSSSNTNAARG
TPQEPARIAFKSKVVSRGHAEIWVDDQGKFFIRDTKSSSGTFLNHIRLSGPNIESRASQL
KDGDVLQLGVDYQGGTEEIYRCVKMRVELNRGWQRQANSFNTAALAQLRALGGIPDPSAS
SPGTPASAPGTSATPDAAAAASTSTGDAAKASTSTPAAATPSADNNAAMSSISDCCICLY
GVTVAQALFIAPCSHVTHFKCIRPLIEQNYPGFCCPLCRTYADLEADVEIDLPEPTPAPA
PPAPTTAADTSAETETGGPLTDEPMSLEGSALGLAGRSPPMAVVAEAEEPVSRPGSIRSG
IGARPSASRRSSAQALAQTFAAGEARARSRPASIAPAAEAHNEEEEGERDVFADAEGGAE
EPSSEPEESQEGSVEEDSAPQQDTPSQSTVKPAAIPASRLSPPAADDLYASLSSAATPPN
NTFLSTLADSSARFGLTSAAASFFGSSRPHQPSNLADTGPSRVSLTGSGSGTNGSDLEGD
DGETQEAGSSAAEDEVVSSTRDKGKGKGKAKEAEGAAPASNDRAQPKKGRRNSTLFPPPD
SLEHPDPSVAAALFI