Protein Info for mRNA_3781 in Rhodosporidium toruloides IFO0880

Name: 12149
Annotation: K12821 PRPF40, PRP40 pre-mRNA-processing factor 40

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 725 PF01846: FF" amino acids 172 to 221 (50 residues), 42.4 bits, see alignment 3.2e-15 amino acids 397 to 451 (55 residues), 42.8 bits, see alignment 2.4e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (725 amino acids)

>mRNA_3781 K12821 PRPF40, PRP40 pre-mRNA-processing factor 40 (Rhodosporidium toruloides IFO0880)
MASASPPPAGSQWTKHISPTDGRPYWSHPQKGSVWEKPDDLKTPLEREISRSGWKEYETG
GRKYWVHATTKETTWTTPKDVSEIMARHSTPAVPTPPRPVMPPTGPAAYRQQSPHAGSMS
PAPPIGGLTPHTGALVAPGGFGAGSPGLLPPRPSALPAPAATTNVTFATHAEAEAAFKGM
LRNLGVTSTWTWEMVMKEAITEPLYKALKTLAERKAAFEKYLVEERERERQERDKSLARC
RKDWFKAMDKLGGGVMMEEGVKSWWSWERGRRVLREKCKDAWAMPKNDEERKILFDEFIA
KLRKDEETRKREMRGRNMDKLAGIFQSLQLDLAGPVRWQDARMLIQRTPEWHHDPELQRI
EPIDMLTVFEDEVRRAEQAYVEQKQRVAEEKRRKARKAREDFSALLAELVAADQIAAGAT
WKSAYPLFHHDERYLALLGQPGSSPLDLFWDVVDELDIRAEQDQLLIETVAKEKGMVVRE
ETTEEEFAKALEGDERVEKMDYGAIKATFEKLHHRAVRHARDERRRAEKKLRLLVDDLRY
AFKKVDPPIDVDIATWEDVVPLVEHTEEWAVLEGNDEARKTAWEKFVRRQKEKRAEREAM
DLDRTERDRQYERERDAERERAGERDPSYRSSRRRGSHVPEDDEQEHERDRRRRLSRSSE
LPYGEDVRSGERKRAAGGAEEQGDASAGGAAEEDGQRERKMPRLGENGDVTKQAVRGVNK
EEGEL