Protein Info for mRNA_3782 in Rhodosporidium toruloides IFO0880
Name: 12150
Annotation: K04354 PPP2R2 serine/threonine-protein phosphatase 2A regulatory subunit B
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K04354, protein phosphatase 2 (formerly 2A), regulatory subunit B (inferred from 78% identity to lbc:LACBIDRAFT_171195)Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (478 amino acids)
>mRNA_3782 K04354 PPP2R2 serine/threonine-protein phosphatase 2A regulatory subunit B (Rhodosporidium toruloides IFO0880) MASPTQLSADEAGWRFAQCFGDKGEVEDITEADIISCVEFDHTGDYLATGDKGGRVVLFE RNEHKKGCEYKFYTEFQSHEPEFDYLKSLEIEEKINKIRWCKRQNAAHFLLSTNDKTIKL WKVFEKSLKVVAENNDGQTPFLRLPRMTYHDTIVAAVPRKVYANAHAYHINSISMNSDGE TYMSADDLRINLWNLNISDQSFNILDIKPVNMEELTEVITAAEFHPVSCNLFGYSSSKGT VKLADMREQALCDKHAKMFEEEEDPSNKSFFSEIISSVSDVKFSKDGRYLLSRDYLTLRI WDINMENKPVQTINVHDHLRSKLCDLYENDCIFDKFECTWSGDGSHVLSGSYNNFFHIYD TAATQDIVLQADKSAFKAKKIGGNKNKAGPGGAAGKGGKNGGAAGGKPLIDTESIDYNKK ILHASWHPRENTIAIAATNNRWSPPFHSPFRQENRLRDLGWPASSPRLASLLADAPCY