Protein Info for mRNA_3785 in Rhodosporidium toruloides IFO0880

Name: 12153
Annotation: K15178 RTF1 RNA polymerase-associated protein RTF1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 587 PF03126: Plus-3" amino acids 278 to 380 (103 residues), 108.4 bits, see alignment E=1.4e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (587 amino acids)

>mRNA_3785 K15178 RTF1 RNA polymerase-associated protein RTF1 (Rhodosporidium toruloides IFO0880)
MDIDAMLLGLAEGSAAPSHSGEGGAKGAGGGGGGKKRKRQTRESSESANDSASDMDMSAS
DSDAPAAAASPKAGRRGGSKVKSSARVETSSDEDESAGKGSGKGGENPYPVEGIYRDEAE
RRRVAGLTELEREDFIATRKEEIAEADNRRMIAEMASRSSGKKKAAAKDEDEDEEDDDDE
EVYTARGTRSRKTTGASKTKSDGFEKLKKSRTEKGKKKAKKDDSDDEYEEGGSKSRRRSP
DSDDESGSDMEQSDDDDRGAKKKGKGKKAPAPVVELADLLQIQVTRTKLAEMCRAPWFEE
WIKGAFVRYSLGPDQRTGMVRYSVCQVVGVEPDRPYRFEGVQTDLWLRLKHGKAERLFGM
EAVSNSPIDSHEWVRWTKQCTADEVPATTPVQAKKIKEQLGKHTSYTLTEEDLAAELAKK
NRQPGGAAARVRLKMQRDHAMQNGDVEKAAELSAQLAELEGPAVDDADRTKRINDRNRAA
NREEVKRAEARSQEERRKISEALQRGDTSVKVDPSARVKTMPRLNYDSRPQTPTPGTPGS
GTQTPLNGASASSNLGGAPMNGTPRAKGNKIESVVASRVQLDLDLDF