Protein Info for mRNA_3798 in Rhodosporidium toruloides IFO0880

Name: 12166
Annotation: K14771 NOC4, UTP19 U3 small nucleolar RNA-associated protein 19

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 647 signal peptide" amino acids 1 to 43 (43 residues), see Phobius details transmembrane" amino acids 453 to 475 (23 residues), see Phobius details amino acids 481 to 501 (21 residues), see Phobius details PF03914: CBF" amino acids 412 to 562 (151 residues), 112.1 bits, see alignment E=1.6e-36

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (647 amino acids)

>mRNA_3798 K14771 NOC4, UTP19 U3 small nucleolar RNA-associated protein 19 (Rhodosporidium toruloides IFO0880)
MAVKSLPGKQKKPAASTSKQPAAASTLSRISQLAALLPPSAAASASLNPLADLVQLYAEL
PLSLALTAGNKEREANRQEVHTSLHSIKAVFEALIKQGRLHGVLKTAKRVKVDTAEGRKE
VAKEDEIVQRVKAWLNERWQDYLEATAKVAGGHWDSTVRLSALNALMSLVRTESMFLTSL
DPARRAKFARSTFAYVVRALLLPPTEDGTLDSDVPEEWKKWWDRCDDVRFFFLEQAAALL
STYSRAGKPASSPPPPPLPPHLIPNTITVLESLTTMPTVQSEINEWFCATPAVKASTSSS
KKRKADEDDPRADGSTGIFDSSSSESEAEPDIVKQLNSQQRKKNLPKLLSLVAHRRVFQD
CWYALLSLPIREEDSKRVLIMLHRQVLPHLTEPKRLEDWLVDCADKGGTVGILALNGLFT
LMQKHKLEYFGFYTKLYSLLDRSVLHVRYRPRFFRLLEIFMGSLNLSSNLVASFAKRLSR
LALSASPAAIVTVVPFVYNLLKRHPSCMVLIHRSSEGDDFDWSNDPYNADETDPENTGAL
DSSLWELAALQKHYLASVSSLAKVFGEAMNKQAYSMEDFLDHSYATLIETELARKITNRP
PALAPVPKRQPIRDSFFPHAGGEAVEAQEKEHEEKEPVDIVSALWSF