Protein Info for mRNA_3799 in Rhodosporidium toruloides IFO0880

Name: 12167
Annotation: KOG1611 Predicted short chain-type dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 transmembrane" amino acids 112 to 129 (18 residues), see Phobius details amino acids 138 to 158 (21 residues), see Phobius details PF08659: KR" amino acids 7 to 181 (175 residues), 33.9 bits, see alignment E=6.2e-12 PF00106: adh_short" amino acids 9 to 200 (192 residues), 92.3 bits, see alignment E=5.8e-30 PF01370: Epimerase" amino acids 10 to 180 (171 residues), 21.5 bits, see alignment E=3e-08 PF13561: adh_short_C2" amino acids 12 to 235 (224 residues), 89.9 bits, see alignment E=3.9e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (255 amino acids)

>mRNA_3799 KOG1611 Predicted short chain-type dehydrogenase (Rhodosporidium toruloides IFO0880)
MSSSTTVYAISGASRGIGFAITSLLAQRDNVLIFAGARDPAHSAQLQALAEKTGKVVPVK
LESANEDDAAALARVVEQKAGHVDYVIANAGIAEDFNNPVFSAPASSFTKQFMVNAIGPL
VLLQQLYPLLTKSSTPRFFVVSSVAGSTSFAATAPLIFSPYSVSKAAVNNLVVHIAREGE
KDNLVATVVHPGMVLSDMGVAALKGMGIPEGEGIPGIPALTPDESANALVKIFDEAKRET
HNGKFLSYDGSEIPW