Protein Info for mRNA_3801 in Rhodosporidium toruloides IFO0880

Name: 12169
Annotation: K12591 RRP6, EXOSC10 exosome complex exonuclease RRP6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 966 PF08066: PMC2NT" amino acids 20 to 108 (89 residues), 50.5 bits, see alignment E=2.8e-17 PF01612: DNA_pol_A_exo1" amino acids 274 to 446 (173 residues), 137.7 bits, see alignment E=3.6e-44

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (966 amino acids)

>mRNA_3801 K12591 RRP6, EXOSC10 exosome complex exonuclease RRP6 (Rhodosporidium toruloides IFO0880)
MADSITPLLDALQQALVPPTRAAAALPAASDLQFERTLSRKLARSLDTESERVLSLASRV
LAWASSGNNAAGGKAAGAADPLDPDLIREGVYNGVTERIEALLEQADEGVEKHLGIGKNR
KGGVGAVGAKSAQEMEERERAKAKVEPLPARLLHDASLEKPQKRFTARTRLPIPSVDDHS
ADGSSAVPLWKPILRRKVNASAGEDGEDGWLKAELYEPKSSFTQTTSTSPPTYTRYAHPY
ASELASLRPPSSFFNKPQKPAPHPADSFTKTPFEWVGDEKALEKMVAGIRQVGEEGMKDL
AIDLEHHDFRTWSGMTCLIQLSTRKKDYIIDAIDPGVRENLESLNEFFTNPEWIKVLHGA
KSDIVWLQRDFGLYIVGLFDTYHATHVLGYAQHSLASLLDMYTDFEPDKRYQLADWRIRP
LPKEMLQYARSDTHYLLSIYDHLRLALHAKGAASKETPSPIEDVFNRSIPVSAITFSLPP
FDHETGHFESGFLVPLARHGQLKAYSTALAVPTLPIKTGWGPGEAKLEVLREVTRWREKV
AREEDESTRYVLSLQGVLQITETGAAGRIKEGRDVMQVLGGAKGGVSDVVRRRKEELAQL
VKETFEKVTGRAVDGHAEGDVDMVGGAATLAVTNAQLSLPAEEPAVRPAQGVWGDAPVAS
TSSSAPLVPVASSSSFYGAASTASAATSGIVASSSSFFGASQAKKTASKASKGKGRAEEQ
AEAIKRVHDSLVLGGGLGQSLQPKLVPTMQPAQVDVDMVDQVDDNAVVAEEPDRGPPAAL
SADHTYVPLTGRLPKPDISATLAASKTEGLTPHVAPKAKDSDVIVVSSLKDKPKKRRRQE
RQAAVPARADDLPGLSSSVPAVGNPQSPPAQQPKAKKPKKDKAQRPAPESIVPHDYSASR
SILDAEPVRSTGAERREQDKRQRKKEAKAEKLSGTKGFEIDVSDFRRAPRVQNAPKKGQK
SQSFQK