Protein Info for mRNA_3811 in Rhodosporidium toruloides IFO0880

Name: 12179
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 984 transmembrane" amino acids 169 to 189 (21 residues), see Phobius details amino acids 353 to 379 (27 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (984 amino acids)

>mRNA_3811 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MRVSGNSPLNESGRANQGVGLAHTPQLLAQGKQATHTRNDPPRSLAHHLLSLARSVSLSR
RKGAGMHAPTHTQLTKLDRPRSTRSSSDSETATQTSHSPRIDRRTTSHGNTREGGWDGGA
RDKETVTRRSGRCAACGGRVRSAIAGLDDDGTSDEVGGSKRATKRARRAGGALTVALGTL
GLLCAPTAAQASPLPLETAPSLPSSRPASTFDSPRPAPPTTTPAPRPRPTLRQRIVPMLS
WSDGDWVEDYGWTRWGLKPTSTPALEGEEGAGHVTDGDEDAELQYAPATAMGDAVASSSS
SPALSISRSAASASPTPTTTSTPSPNPTLPFRARYSAKIPPGWTPQERETNYYAVPIIIA
MSVLVAVIVVASIVVSVVVRRRKKRRREKRRERRRARKEGAAPGEGDGAAVVEEKTLQTK
EREKGWRGVMGRVEDGLRRRNKGKKKAQHEGGEREDGGVEEAPPATTRRRIVRTTGFAAG
DRVRPRRRRRRAAGGGDDDEDDEGTALTRTGTSSTTSSIVNDTLTARVAARLRRQDSAGS
AARRTGGAGTTTVFSRDVNAQSAVSLTASALSRVSSRASGSSRRLPASSASSGAGVEQPT
ILFTPADDATLPAHLPLPGSSVPPSPSLTPTPSLSRPLQPQPPIPSSPTTPTTPAAADPS
TSAFYRSLIVSDDSLPAPGPPAYRPSGSTVQATRRFGAGDAGAGGGQQGRLRRGVFGRER
ERGGAREEDEGEWYWPGEKGRTPFIGAESSTSSAAPAPPPEPAPESTPADEDDPPVDRSL
FTAHIATDDKAVLARLRAQRDVVLADQEDAGAVAGPSSSLPEPSAPTPEEDDAEVDADGF
ERYDLAEVGASPFDGDSSPAVSSSSTLLPAPPQRVHQPSLGARSGSTIPLLSSTSTASTP
LASPFLPPSSPTEKAALADSYAAAAEEGEDDALPLYLAGSGQSGAREALALASAPPGSDE
DEDDGGWTREVVRNEGEREEEGIV