Protein Info for mRNA_3818 in Rhodosporidium toruloides IFO0880

Name: 12186
Annotation: K09650 PARL, PSARL, PCP1 rhomboid-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 377 transmembrane" amino acids 36 to 56 (21 residues), see Phobius details amino acids 130 to 147 (18 residues), see Phobius details amino acids 179 to 200 (22 residues), see Phobius details amino acids 220 to 240 (21 residues), see Phobius details amino acids 260 to 282 (23 residues), see Phobius details amino acids 288 to 315 (28 residues), see Phobius details amino acids 320 to 340 (21 residues), see Phobius details PF01694: Rhomboid" amino acids 165 to 339 (175 residues), 53.5 bits, see alignment E=1.4e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (377 amino acids)

>mRNA_3818 K09650 PARL, PSARL, PCP1 rhomboid-like protein (Rhodosporidium toruloides IFO0880)
MFSSARLLLRQRPRFVSPALRSSSSYTPPPLSTGVARQAAFAVGVAGLSLGAAAYYTNKD
TLDRQAEAGYFSWRRLASSSTGGLQPSLAKQRWDEVYSDVSKWIQAVGQDNRLAVILAQN
WLEMSEAKRTAAGLIGVFGGVWLAWRLPRRLGLGKWLAHDAMSGKSVTMLTSTFSHRTIP
HLAFNSIALFSFTTAAFGTFNFSELMSTESLPRSTSRYEFLAFFVTTGLVASLASHAWFA
RRVAGRLLAQGVPSAQVRQTVLPSLGASGAVYAIVSLSALSFPSTSVSLIFLPFFPIPIG
LATSALLIVDLVGLIRGWAYLDHAAHLAGALAGGAYWLFGHEAFEALRRLMWDTQKREKE
RELAEQKKAGQGRWISL