Protein Info for mRNA_3820 in Rhodosporidium toruloides IFO0880

Name: 12188
Annotation: K20046 SLA1 actin cytoskeleton-regulatory complex protein SLA1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1270 PF14604: SH3_9" amino acids 12 to 66 (55 residues), 35.6 bits, see alignment (E = 1.7e-12) amino acids 384 to 437 (54 residues), 38.3 bits, see alignment (E = 2.4e-13) PF00018: SH3_1" amino acids 12 to 49 (38 residues), 29.1 bits, see alignment (E = 1.5e-10) amino acids 384 to 433 (50 residues), 33 bits, see alignment (E = 9.6e-12) PF03983: SHD1" amino acids 592 to 652 (61 residues), 105.4 bits, see alignment 2.7e-34 PF08226: DUF1720" amino acids 982 to 1049 (68 residues), 26.6 bits, see alignment 1.7e-09 amino acids 1040 to 1098 (59 residues), 25.3 bits, see alignment 4.2e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1270 amino acids)

>mRNA_3820 K20046 SLA1 actin cytoskeleton-regulatory complex protein SLA1 (Rhodosporidium toruloides IFO0880)
MAQPTYAGLARVEFEYEAQTEDELTVQEDQVVWVIEDDDDDWHKVKLKVSDPSTASPAGL
VPASYLAPVPALRTTTALYDYAPARDESTGELENDEEMEIAEGEELEVLEEESEWVLCRK
TGGTKGVGYVPATYIDGGAGAEEAAAAVDAPEEEAHEDYSQVQDEHEEEEEHSYAGPAAT
AAAVGAAAGVGAVAASHTASEIKTWSVTMLDAKKKKKKGTLGVGNGALFFASESDKTPVQ
QYPLSSLADITSEKSKHLHLSFPSAPDGEPLHFVIGDKPTFDDIVAKIESDRGAPATNGA
SSSIPPPPPLPGTNGSTAPPPPPPPPPPPGPAAASSYVPPPPPIRSTPSSSSALPPPPIR
SAATPSPAPPAPPAPAAQKGNALALYDFESQGDDELSLAEGERVEYIPGGSDDAEWAKVR
RVDGSGEEGVVPASYIEIDEGIDMNASAPPPVPAAPAMLSPVTAAPPVPTPPPPPPAPPA
PAANVLRPPPIRSVAAANAESRRSVPQDEEDAEDEAALRAQLEADAKAQRDRERRAEKER
RAERERRDRMKSQPRASPIPVPNTRDEVDSDSGAAPPPLASRPPKEKKREVRKPNAAKTR
IWKDRTGQFKVEAEFLGLNANKIRLHKVNGVIIEVPVEKMSLEDVAYIKQVQSGGSSSRR
DREREREGSSDRRERDRDRDGRSRSSRTDAVKSVVTVSKPRRSEFDWFDFFLQAGCDVDH
CTRYARNAENEGIDETLIPDFEESNLRGLGMKEGDVIRVKRFIKEKYAKPPPTPDKDAPS
SSLSPAAASSASDRDAQIAADHALAQKLARGEPIPPAPQLFSSGPEGTLKPRRGRRNTAA
SNTSVNSGALTAAASELEKNRTTSPATTPSASTQRPTSPVESRKRSSSTVPVHGGFDDDA
WEVKPSSKPAASAPSPAPAAPSPPPAPTPPPAPPAPAPATSPAPAPAKPAEPARTDSNAG
LTYNDGLLAQLGIGANGTSSRPSSTPAQVAQPTGSSSSFITPQATGFNPNAPRGPIAPVP
ANQGLLAPLQPMRTGMPAAQALQAQNTGFFPGATTIGVMPMSTGFSAMPMMSQPTGFSSM
TAPMSMQPTGFVPQATGFASQPTGFASQPTGFSSQPTGFMQSQPTGFMQQPSNGFMQPQP
TGFGGGGSVFNQPQQQQQPQQPIQFNPMPPSSSSQSPANTVASIGATHNAPTNVFASMKD
GTFAKGSTHLPPQDSTRYDALRPGMLQAQPTGFMQQPQQQMGMGMGMGGMMPQMTGFMPQ
QQPQYGYQPY