Protein Info for mRNA_3821 in Rhodosporidium toruloides IFO0880

Name: 12189
Annotation: K19001 HELLS, DDM1 ATP-dependent DNA helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 896 PF00176: SNF2_N" amino acids 189 to 498 (310 residues), 171.3 bits, see alignment E=5e-54 PF11496: HDA2-3" amino acids 445 to 753 (309 residues), 42.2 bits, see alignment E=1.2e-14 PF00271: Helicase_C" amino acids 613 to 724 (112 residues), 66.5 bits, see alignment E=5.2e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (896 amino acids)

>mRNA_3821 K19001 HELLS, DDM1 ATP-dependent DNA helicase (Rhodosporidium toruloides IFO0880)
MAKRSPTRGKPAAPVKRVDTITLDDSDDEGPHASTSTPATSIDTPRADKEPMKVDERADE
STDVEIVEPAPAPENKPVTLKEAFKNVIKKAKIYTQKLEEFQRKRNAWLAEKRAAEAEFD
DPASGSKKRKANASPAPKKSKKKRSKKQEEAAKKELPFEVPVPSAIKATLKDYQVDGFNW
LYGRYMFATHGAILADEMGTGKTLQSITLLSFIYSAFGAKQPAIVVLPKAVQQNWAEELK
RWAPSLPFMVYAGNKDERAALREQLGLKGWRTPLAEADAVAKLGVSAAKEEVARWPRSNP
NRTKPYPIILVTYNILLRDIEWLWQLTYSLIVCDEAHKAKNLSGKTLNSLKYLRGDFRLL
LTGTPLQNNLTELYALLSFILPQIFNDRELFEQQFDFSAVVSEEGHRISEQEEVQLLVAQ
LHEILSPYMLRRCKKDVIKDLPLKKEYVLTAKMTKLQKEMTEAALEGQLRAYLAGTTDNS
RESTPRSAKGRGSRDADIINPALLNEKGRRTRKRESRSYKEEMHESMDDDEFEQQLAEEV
EAEEQRAREKQVAKLQVAGQREFDLRAKHTKFNSMMTNLRQIANHPLLKQDTRMPNDDPE
LIVKLSGKMMLLDRLLPALLERGHKVIIFSQFVKMLDLLDDYIELRGLKRFRLDGQAEYK
ADQDEIREFNTAECTEDSTNIFLVSTKAGGVGINLVGADTVIIFDSDWNPQNDLQAMDRA
HRIGQTKPVLVFRFASANSIEQTLLASATRKRKLERVVLGNEAALAGDGASAASNFINEV
RGKKPGKGQAKNEAIKTLAQKLLEAEGELVSLDEGDEVLTDEQLEALLDRSEEAMTSIES
SKQTSGKQAAFEVVETIEEETIQQENVLGGVLGDVTDPATATTTDEEDEDETDEAQ