Protein Info for mRNA_3827 in Rhodosporidium toruloides IFO0880

Name: 12195
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1575 transmembrane" amino acids 617 to 634 (18 residues), see Phobius details amino acids 1548 to 1566 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1575 amino acids)

>mRNA_3827 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MGVRDLWPLIKAVGAIFAVGRYQSWREAGVLVAKVLRQSSTNLFLVDVSSVLGSLHATRL
TRLLDQDRLGQRLAQEQKALVLESTEALADLVQGIRALCPAVQIHLVFDGMGRLAPKEGE
IRTRDKSRLTILLDELLQRARHAASKGKRHTPSARRLLAAFGIVWDVEGGQMRVGSNLDK
LSGYATICGLQRITAEDIDALATEASRYLVNSCTLVTAASDADWHIVAATRQAVSPSSSA
TPGDPGQTGILTASEHLAVLAALSLTAGAVATASNDGDIVTGSGSGHSTVHVRLQSRQVE
VVDRRLFEQRLGLDAGGVAAANLSLTLGQDFVGSGVHQIGLETARAMPSSLAAWISPDWL
RLASTSTTTSINEVWSTRSAHLARELRGSTPQVPWLAELRAFCGATPAPPLVERRAMSVK
VWEELLQEQLRSSTPLAPPSAPHPPASSPASTPHPTPTTPATVASTTPSAAGPPAPLSQP
LFAHASPSNPRRFFHNISLAPNLSPQKPHERVSEPPKVPKPAVQRPRHPLIQTRIYPHAP
TLFEQFCGLTRPTSLESDGPPPKKKMRTWTKPLKGQTGDSPVKEKGGYPLRLSCPLRTRN
LDLKTVFVDEGMQQLATFVRSTFGAVLPLYLSCLAKQMRLQRRLANPLSPGLLEMTANPR
AFATVLERVALFSLGGGATRPAKYQLSEEETLFQDLGVRCLFGEADETGELDGTPDLQTR
LLVQSWRDEPAEIRQLIISKRVLLSDYRAATYTSSLFAIPNPINTLLLSPPGRAILSDFS
TSLAVNVWNRQQNLHNNFCRIVLSWLSKPFATLSTIQHVGRLILDGLPPGFCTILFEPTL
HEKHAIAAVAAAIAQQPCLATRLANALVTVLAESTKFRTAEAPAASDLIPKLAALDDDLR
SALASVGISAPILAASLGTIRRTLAGLMACGAAADVIDSYTQSKRLDSPLSLDDRHASLA
ILLGRGALSGAGSASTWTLEECLKVVYSRLQMEEAAAEGATARGRQGGSIAAGLEGEVAG
VRSTSLAAVLELVADSLEVQGPVFDAKGMVMLPRYTPIAAPGLASLAYAAGTGDLDVPQL
AAEFYEYLARLAERLSQRGVPVDVHQKIAVFFAEHEAFLRDIAQARVDLSRTAKDIYQLI
KGSMTNFTPRQLMEALSSCQIAALAAVAPNVAAKTGQVRHGRLALGPLQVSVTIVRLDQA
PHSIRTRLLGDAAQGASVQKLIEAAASDGKRAQALLAGLARLPDCERPASPAPAPNHTTR
DDADRSACADALRSNIFSHLPPKVLGRKVLTTTPRSLAKPPIPQLPSVPSATWPSTLATI
RQHLGLRPDGSGSPVKGAVLVSLDPGAKVVVDGQSEIIGEPGSVRVARARDAVFLTLQRK
LRREREVELANMRARGAGEEELAMAGLRMREKEQRIFQSSEDQVAQQLVDWLVPPSSVAR
PVVLAVGDGVLGNYTGQRGAKVANPIIQRMIHVAENRPDIKLLVVAVPEAHTSLLCIRLA
CRQLFATKLLKFSLRKRRSSFPFQRLLHCPHDRLTAHRDDVGAANIGSNLVSLALFGVTA
LSKAFAEMFSFPWFS