Protein Info for mRNA_3829 in Rhodosporidium toruloides IFO0880

Name: 12197
Annotation: KOG0519 Sensory transduction histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1143 transmembrane" amino acids 233 to 251 (19 residues), see Phobius details amino acids 261 to 280 (20 residues), see Phobius details amino acids 287 to 306 (20 residues), see Phobius details amino acids 326 to 344 (19 residues), see Phobius details amino acids 349 to 367 (19 residues), see Phobius details amino acids 373 to 393 (21 residues), see Phobius details PF00512: HisKA" amino acids 428 to 496 (69 residues), 29.3 bits, see alignment 1.1e-10 PF02518: HATPase_c" amino acids 563 to 729 (167 residues), 76.4 bits, see alignment E=3.8e-25 PF00072: Response_reg" amino acids 1033 to 1102 (70 residues), 40.9 bits, see alignment 3.2e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1143 amino acids)

>mRNA_3829 KOG0519 Sensory transduction histidine kinase (Rhodosporidium toruloides IFO0880)
MSEKRDSLVPISSEKPPSPQRRRSSLRSALHPSAPTSQSGLDGGGITGLPPPAVAFVPPG
TSSKLKVRWQKLKRRIGSGSAPSESLGDPTATTESDNGSSFGAANSRRIPVFGPNGERDD
EVQEVDEVVVEQTNDYDCWKRTTLPSNTASHRGATGTGTGTGVGTGQIGTMPSDASSLRQ
TAYEASGPIEAVFGFARYRVWPIMTRFFAPTYHDPSVEDAYQKEVWYNSKGSHIVGACYL
IFNWVLTIALFPRPFSLWNKIQLYGLGPATTIPLVGLAAFDVPRRRVWIWQACVWVSIWI
ASFANPLDMYICGYYTPTAHCGGKDYMATFYYVTALPTVALFALGQKRICAIIFDLAWLI
FVSSTILPRRASWARNVVNVLLFQGFILFLHYLREMGERRVYTMRAELKISFKAKQRAQI
NERKQLDAKRRFSSYIFHEVRVPLNTALLAVQNLKGLNVFDDDSEHAVEYKALEGSLAMM
SQVLNDVLDFSRMERGGFSSVARPFSLHTLMRSIIVPLRLDCAARGLSLDTDLDKRIDEL
AVQAAYPDEDLKLVKEGEGIVIGDEMRLRQIIGNLVSNATKFTSSGGKIGIKTSLIYPLE
DYETPQNLPSAAELAGEADLSDATEATYSPRLTPNRLHQHEAKTTPQPKEMLVVRFEISD
TGAGIKASDMAENRLFSPYVQTALGREQGGKGTGLGLSLVRQIVMLSGGRLGVRSKYGQG
STFWCELPFALPQPTGERLQRKASPTTLSDKSPDTTPGSDSSVHNEFRFVSSLRKRSSDP
TLDSIDEGSLALARPRDLSVSTQASNFRYTSSASPSVPPSPAPIPDSSNSSTPLASSPST
SSASFSPPIFGQPFSLVPHRPENRTQISSQSAPAGVTLAPPQVSAPVVSAVPLASPALAA
QSPSPLVPKKPGTTKLDFADGPLKVLVVDDDALTRRLMSRMMMRLGCEVETAENGQIALD
MILAPPPASAQHGIAEEDEREDDDKTVEGHSQPRSADVDVDAAERGEAAGPRRSARKQKK
VGYDPTMGIDAYQHYSIVFLDNQMPVCSGVQVVSKLRSLGRDDLVVGVTANALLSDQEQY
LESGASSILTKPVKEEDLIKHLRIADKRRSERKDPAFRAQRQAIVSSGPHFPPIEAMIPD
DED