Protein Info for mRNA_3838 in Rhodosporidium toruloides IFO0880

Name: 12206
Annotation: HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1937 transmembrane" amino acids 1856 to 1878 (23 residues), see Phobius details PF01852: START" amino acids 610 to 775 (166 residues), 38.8 bits, see alignment E=3.5e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1937 amino acids)

>mRNA_3838 HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961 (Rhodosporidium toruloides IFO0880)
MTTAGLSYTDTNAAYSSSLASALSHFQSLLSNPHSKSWKPVSPVHSASGSGSAGSANPGA
NGAGAGANGRTGDAALSTTASPGGAAGAKGKARATPASTSAASSLVNGLAALDPSQVRVH
KKADRQRNAEIVRAVAEVPCDPDAVDLEAVRAVLATPEVRAHWDKLVDSSHALSLIDPLT
RITKTDYRLGWPASPRDTITISRTFVSPDSSSLIDLSTSLPRAADEPAFLRPAPPFVRAN
VHLMAWCVQVLPPAAAPSPSLGSALSTSPSSLASTTAFPQHQAQQQHRLRLTLFWQWSLR
LPTALSSSSSSTSSPTTTHIAPLLSSFINYLSSPAGTSMPLVRGYGRGVELNRDEWDVQA
EMRSVEYAVVYVGGSGESSLHDAEAVGGNLQGLDELVRRRERVRLERSVELSLPPLGTLN
SADDGGSSDGWDVRVAMKSLGGPSTASTPLEGPASSDLSEPPYTLSISAPIPSSSSGSPR
LTLRLSHPPLRSPSHLLRVTLTVQRLAAGRYVRVNGEKMVIERIEGRDLSRTRGKWEFGG
EGRTSDEGASSITSDAGSIVDHDAEGAAPAPGESSVSIRTISAASPSAQIAALLRRSYIY
FLSLLQEPPAKWRHVSDSQGVTVTQLLSPDPTLTIYRAEAVFVGVGVWDVFATVVTPGVR
KTWDKGVEEAVLVADEENGAGVGELSEVWWERRKGQWPVAPRDSVLLRTAYKSPSSVHIF
SSSTDDTSLFPSIPPAAAGTIRTQTDLYGWSIEALSPTTTQITLLDQSDPKGWSSKSSWT
PGALIQAVAGVRDYSIRNGAPPVVTRLSGGGVRKMAEEYDPEKATLRVEYAQPSTVASDA
EADSALIECEIRCDASTWASGGIDVVVDPPPSGVSCLARHRLSAGGGLWLTIEHAQNVVA
EEGKVVVTVRRGTSGPGAGGHKDKSLGGAAPTTSVVVNGARVKVDVEVLDEEKIRELEKR
KRVKPAPVPLDQYETLGPRPGQPGQTALPSAGRGSPVTAVAAPTSADDGSTDKEAGETVE
TGAIDDGLAAAGLALGANGDAPASSADAPAGPDAGAPVVAASEIAPPKPPLDPPACALEA
LAWLQTFHAEQGPELTDPAPGWSIVSERGGIVVRKKLLPAVSETFPVYRGDKIVQGLTAE
EIASVVTSVGCRKAWDERVDNARPLASYGHGVTTCAIMTKPTFPFKSRIFYVASVSAAVK
VPSASSGASTSTVLFVASASYTPLTSTTSDPFDASKVNPSSFLAGQVLLEGWILETLDPY
TSSVLAIPSTRCTYVACMDQKGSVPLALNQILNANLARSISNVEQLGKTRGPLPRLWAPS
AGMQIEGPLSDDSDADFVWKLSPATLPPASPVATAGESSAVVTVDFDLDDGSFRSLLRVG
GKRRTREASEDSELLLGSAGSKASDKVAGGKSKPMPLLAPSLPVGTSLLKSELPRSASLN
LGTAAPPILQKPPIISELSHKTSRGSLRSKSPPAAPSTTTATAGTTAPVTPATKTGPSSS
VIDPGAHDLVVAELVVDLKQYPHGYAVTAVSQLLPAAGGDELLSLDPLPARAPMTQSTAT
PPTQLPLRCVAHDAPLPSILTASLDAWKRANHLVRVLVPTGAITHPIQDPLRAGDESSKP
APPEWFRLLFDGPGALVEIKIVALPALSPAAERTAAKRPKDPPAPDKDVAGKVTGQAAKP
VMFNGEKLVVQSQKESKVVLSRFEDDELPLQGAKISRGPPRKQRKSSIAPDVEPDRPPPQ
LLPAELQKPLAVSARLLAPKPVTPVVDDFEFPDPKSPGNMTPALEEARSPVLGSKSTLKP
SASRRDTATSDTIAPAGPLLSLLGNYQLSRLGATMMPTVDVTETSPAGVVAVRRTYTLSF
VLLVALISFLLGSLLRSLLTPADYIIYRPVTSAQQADVEHALLQAFDPARRWREARRLVE
LRGMLGWDVIVAAVRRE