Protein Info for mRNA_3841 in Rhodosporidium toruloides IFO0880

Name: 12209
Annotation: K13431 SRPR signal recognition particle receptor subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 713 PF04086: SRP-alpha_N" amino acids 25 to 318 (294 residues), 123.8 bits, see alignment E=1.4e-39 PF00448: SRP54" amino acids 483 to 634 (152 residues), 119.2 bits, see alignment E=1.9e-38 amino acids 654 to 711 (58 residues), 38.5 bits, see alignment 1e-13

Best Hits

Predicted SEED Role

"Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)" in subsystem Bacterial Cell Division or Two cell division clusters relating to chromosome partitioning or Universal GTPases (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (713 amino acids)

>mRNA_3841 K13431 SRPR signal recognition particle receptor subunit alpha (Rhodosporidium toruloides IFO0880)
MLDHCSILTQGGLVLWERSFTPSASPFDTLIREALIEQRSTSTTTTTAEGAVSRWDKDAH
SLLWLLANDLDLVLCVAYQRILSLPYVADLLEAIRRAFLKAYRETVEAIVESTRGKDVLV
LGGAGGGKAAFGLFGQKGWQKVFAGWDETFNRILRDFEANAAKVRPLRLAFASLADEPSL
AQNKKTTKTRTAAIADSPSSSPGDSEATTPSLASPSAGETLDAQTIARNIAALKARQKAA
QKGKAGGRRSMTPGGTESEGGGSESDATPTKPRARKAATKWSDSPITEADLAAYDYSSDA
PGSPAPPGTPQKEVEVDTKALVDRGAMGKRDAKSGLYEVAEYAVGGGSDDEDDEDDGAAT
AAQGATSALGSFFSRLSLSPRALTAADLAPILSAMQQHLMSKNVAKDIAEQVVQSVGKSL
EGKKVSSGSGLFGGGAGKKAVREAMHDALVRILTPKTSTDLLLEIQRKRSASNAKGAVAD
PYAITFVGVNGVGKSTNLSKVAFWLLQNRLRVLIAACDTFRSGAVEQLRVHVRNLGKLEE
ELEGEGAAKRVELFEKGYGKDAAGIAKDALAYAKQQGFDVVLIDTAGRMQDNEPLMRALA
KLIAVNQPDKIIFVGEALVGNEAVDQLTKFNRALRDFSGSAGVRSSAGAAAGEGRGVDGM
ILTKFDTIDDKVGAALSMTYVSGQPIYFVGTGQTYSDLRMLRVGHIVQALLQD