Protein Info for mRNA_3846 in Rhodosporidium toruloides IFO0880

Name: 12214
Annotation: HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 565 PF02301: HORMA" amino acids 130 to 308 (179 residues), 149.1 bits, see alignment E=2.2e-47 PF00096: zf-C2H2" amino acids 498 to 522 (25 residues), 20.2 bits, see alignment (E = 9.6e-08) PF12171: zf-C2H2_jaz" amino acids 498 to 522 (25 residues), 23.4 bits, see alignment (E = 8.6e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (565 amino acids)

>mRNA_3846 HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667 (Rhodosporidium toruloides IFO0880)
MQIERQLKARENGEAYGHDVLTASMEAKACEGKVCMVCGTAWERRLDGFAAGWMWLKGLG
VWCERCSTGRGHNIPSTLPRLPALEVVPEDSLKDLKFAPRRSVPRSSSKRDRSADDTAKQ
STPWAVRDRNLKEGTSSEVDKLLDYLEVGAIEAIENGYMHQLVFAIYLDPDEPTNLVESY
TFTFSYKTDPQGNKKPELVVQDQLSGMVISSSMFGHNSRDNTRKEGDVKRQVQQMIKNLI
TSTQVVDELPRRRFLNVRLFYTDDTPPDYEPPHFRPVVIDAPGYSFSTPTVADEPDFGTL
GTVTTGFHGVALHSVSIAHVLDTSYDENISLDEALARNKRDAASRPVVWNAESLAERVTD
QDGKLVVAEPVAVKDPSGWVIPFEPVSSAESKEMAQLRQKVGIKVNEDALVVAKGHMEEK
LVEESPVDSNISENKALRRHRAIATTDEHPPTTSLPAAQVAPVVLRHPCGWPDCDYSTIT
RSNLIQHVSSKHLKLRPHKCTICGTTFADSSNLRGHLKSKAHLKMAQRAQREPHVPEDSE
DRMDEEREIHDLIRHNTWILSTLEL