Protein Info for mRNA_3851 in Rhodosporidium toruloides IFO0880

Name: 12219
Annotation: HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 593 transmembrane" amino acids 90 to 110 (21 residues), see Phobius details amino acids 128 to 146 (19 residues), see Phobius details amino acids 157 to 184 (28 residues), see Phobius details amino acids 190 to 209 (20 residues), see Phobius details amino acids 219 to 239 (21 residues), see Phobius details amino acids 246 to 266 (21 residues), see Phobius details amino acids 286 to 304 (19 residues), see Phobius details amino acids 316 to 336 (21 residues), see Phobius details amino acids 355 to 376 (22 residues), see Phobius details amino acids 393 to 413 (21 residues), see Phobius details amino acids 421 to 438 (18 residues), see Phobius details amino acids 450 to 471 (22 residues), see Phobius details amino acids 485 to 506 (22 residues), see Phobius details amino acids 554 to 577 (24 residues), see Phobius details PF07690: MFS_1" amino acids 98 to 495 (398 residues), 120.7 bits, see alignment E=7.4e-39 PF06609: TRI12" amino acids 159 to 512 (354 residues), 42.1 bits, see alignment E=4.4e-15

Best Hits

Swiss-Prot: 34% identical to AURT_GIBZE: Rubrofusarin-specific efflux pump aurT (aurT) from Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)

KEGG orthology group: None (inferred from 36% identity to cpw:CPC735_000930)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (593 amino acids)

>mRNA_3851 HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473 (Rhodosporidium toruloides IFO0880)
MSGDAIELVWRAGDESRSTLTPVEHRSRLDSSVDEKTLAGTESVADEIKVVIDGAGIGER
ELEALPKDATAQGQVASSSKRPEPPTGIKLFFLLVALMLVEVLVGLDNTIVATATGTIAN
HFNALGDVGFYGAAYLLTCVAFQPLAGRAYAYYPQKLVFLVGLVIFEVGAVVAGCATSSA
MVIVGRAIQGLGYSSLFIGILAICANTLPIRTQAVVTSLMNVSYGSGTVLGPLIGGALTS
KASWRWTFWINAPVGVFAAVLVVLLCHPPLIPQTLPIRTRIARMDWGGALLLLGSMVCLL
VALQEGGIKTAWSSGRMIGLLVGFAVLLVAFFALQTYLAESSSISVRLLTRNRSMAATSL
VNFCCGASYYALLYYIPIRSQTVDGASPVRAGIELLPLIFLNMTAGIVAGWTVSKWGMVQ
PAMLVGTGFTAIGAGLHASMDQNTTEGQWIGYGIVVGTGMGALYMMSFLASQMLVDEEDK
SKASSLVCFWQIFGGTVWVGASNAIYANKFKAGLEHIPGIDVQQVLDSGVDRFREVVPPE
LLDSVVEVCIDALFDVFLSCAILGAVGFVAVFGIRWVRIEDDKTEKREQEKAE