Protein Info for mRNA_3858 in Rhodosporidium toruloides IFO0880

Name: 12226
Annotation: K17890 ATG16L1 autophagy-related protein 16-1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1056 PF12937: F-box-like" amino acids 184 to 225 (42 residues), 30.3 bits, see alignment (E = 4.8e-11) PF00400: WD40" amino acids 788 to 824 (37 residues), 31.9 bits, see alignment (E = 2.6e-11) amino acids 829 to 864 (36 residues), 16.6 bits, see alignment (E = 1.8e-06) amino acids 868 to 904 (37 residues), 29.8 bits, see alignment (E = 1.2e-10) amino acids 951 to 986 (36 residues), 27.1 bits, see alignment (E = 8.9e-10)

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1056 amino acids)

>mRNA_3858 K17890 ATG16L1 autophagy-related protein 16-1 (Rhodosporidium toruloides IFO0880)
MSQLYRPDRAIRGESPPTPAPSPQPRPRIYASPPSSSRAAEAGPSRPVEREERMQVDDGE
DDGRGASGWQPKGYRRPDARTASSSGSIPFFPPDHLPPSPSPTGTASPSPFTSQSPALLE
PLASPPPNPVSPADQASLLRTAVNALPRHAREELMSLLLLDTPSIDLSPLYRLIHPRLQR
DFLQSLPLELALHVLSFIDDHRTLARASGVSRYWHGLLERHEVWRGIPPHARGLLLACTD
VRPTPLPPATSFSRLTGSRRSLEMHSSTRRRSAEDRPTSAGSGSSGRSGRTGSEAEAAAM
ADAFGLVAVEETDHEQAQGRQDGARTMTMGLGIGEGSLSLADFAGHSMAAPTVMPPNNSS
GYQYSRGLAARRSRMTPSPVVVTPPPAPSTSRTHMQTPPQPPSSAQSSTAPGSSGSRHRL
ANGFDLSDLRHSLLAGDPIASNSSPNPSATSSHPSPSASPRSFVPRPTRMTTTQALQKIL
AQPSPSHPHFPSPSFANPAPKPTRPFSYKTHFKCAYLTEQAWLRGPGRLLSTQMSADRGI
VTSLGYDNEWIVVGMSTSKVHVFEAETGTYVRTLDGHDQGVWCLTLVGRGGGPRADGSTG
QGGDVDGEDEDDAWNGGSSRNKGKGRARDDFRRPPASPMGTTFTQGLAPPSTHHTLRSAA
SSPSFLSPSFRDTSTTPLAASSYSSPSSPSRGSSAFPPRQPRRQRSTASLSPGPSSPAFS
QQTSPPQNVYGPSTKGGMGIGAGGPTGDSLLQGNACGTARGWGQAGAVVVSGGCDRSVRV
WDVSTGLCIHTLTGHTSTVRCLRVLDGRPIAVSGSRDGSVRVWDIDKGESVHVLAGHTMS
VRAIDICGNRAVSGSYDATCRLWNVDTGECLHVFRGHLSQIYSVAFDGLRVITGSLDSTV
RVWDAETGKFIALLQGHTSLVGQLHLDPHTGTLVSGGSDGRVIVYSLATYEPLHRINAHK
SSVTCLQFDERFIVSGGNDGRIKLWDMGTGAYIRDLAEQTSGIWRVIVRDDKCIVLSRRE
EPNPNPTAEEPELTVERTLMDVRTFRPSDAELYGKA