Protein Info for mRNA_3872 in Rhodosporidium toruloides IFO0880

Name: 12240
Annotation: KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1158 transmembrane" amino acids 1000 to 1017 (18 residues), see Phobius details PF04851: ResIII" amino acids 413 to 604 (192 residues), 33 bits, see alignment E=1.8e-11 PF00176: SNF2_N" amino acids 429 to 738 (310 residues), 191.2 bits, see alignment E=6.8e-60 PF14634: zf-RING_5" amino acids 799 to 861 (63 residues), 28.4 bits, see alignment 3.8e-10 PF00097: zf-C3HC4" amino acids 800 to 859 (60 residues), 22.3 bits, see alignment 3e-08 PF00271: Helicase_C" amino acids 990 to 1094 (105 residues), 54.6 bits, see alignment E=4.1e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1158 amino acids)

>mRNA_3872 KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily (Rhodosporidium toruloides IFO0880)
MATPTMTARELLTKVFQGEQTLTPELLSCENDFAMHLMRYPDDTNFVAERKPGVHYGELI
CMEESCYSEIKLNPNPSLPDGGIGRGFGWLFKYWEHIDNSPEHKAARDARVIRDKQIKSE
MPPDAWTPKVKKTSSGAASSTAASNHASGSGIKAEDRVFGGYDGTPRASTSGSTSKSNTK
KRPSDPLYRSSVRGMLTDDDADLARDKKPKLEATPGVLAERRNEPQVAAAPVIVPLQPTI
AEQNAYKEAKSALERYELLAEDMRTRPAAQRETGFYAQLDLLNGHIAKQRQIIENSKKRF
GAAIEPVVQPRPAAAAAAMPGAFPGAVGGHAAATDPAAAVLARLSGSRNAAGEDSDDEAM
WNNFAPVTNEDFDHFIKAALEGEGFEGNENVNAAAAAIGLKSQKEPIQHMTVDLMPHQII
ACAWMKEREADKTFGGILADEMGLGKTIEAIANCLINPSADPEEKTTLVVAPLALLNQWE
AELTDKVEKGHLSICKYHGPERSKYTAKKLRKFDFVLTTYGTLVTDFADEENLEKKAKKA
AKKADDPEAWEDFLAPHEDGPLFKMGFYRVILDEAQYIRNKATKVSRAVTRIDALYRWAL
TGTPVTNSLADLYPLFRFLQLKPWYDWARYRENVIHYEKKRPEIAGRKAQAILRTCMLRR
KKDSKLDGKNLIELPPRNVELHELEFSEEERDIYTAIEGKAQAKFNRFLRQGTVLKNYAH
ILLLILRLRQICFHPALVADAEKTAEQQEEAKKAVKDEAKRAKNEVGKAFVDKIRKMRLD
AAVERCNAEQQGTDAAGDECAICMEDFHESEQGGAVTRCAHIFCYTCLVDVINAEQRGDH
DEEGADKKCKADQRPCPICRQPCGLKDVFKLAAFEPTDEELCTAANMELDREEDDEDDTL
GGFIVPDNEEDDDDFGKSVSKKKPKQPNRAIIQDSDDEEQAEQSEAEEEPAPRKNKGKGK
QKEKPVYELKFIKEQEPSTKMIWAEKEVERMLKENTDDKVIIISSFVSALDMMDIYLESK
GHRTVRYQGDMSINEREESIRILKKSKKCRIILLSLKCGGVGLTLTRANRVISLDLAWSN
AVENQAFDRVHRIGQKKDVFVNRLTIKDTIEQRILELQKKKQGLADASLGEGGTYKMGKL
TVADLAALFGLNVRGQRV