Protein Info for mRNA_3877 in Rhodosporidium toruloides IFO0880

Name: 12245
Annotation: BLAST putative protein [Melanopsichium pennsylvanicum 4]

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 478 transmembrane" amino acids 68 to 87 (20 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 160 to 178 (19 residues), see Phobius details amino acids 196 to 214 (19 residues), see Phobius details amino acids 234 to 252 (19 residues), see Phobius details amino acids 259 to 285 (27 residues), see Phobius details amino acids 306 to 324 (19 residues), see Phobius details amino acids 349 to 370 (22 residues), see Phobius details amino acids 380 to 400 (21 residues), see Phobius details amino acids 412 to 435 (24 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (478 amino acids)

>mRNA_3877 BLAST putative protein [Melanopsichium pennsylvanicum 4] (Rhodosporidium toruloides IFO0880)
MRLGAGDQLGEYIAPTTSSSSGNSAPYRRGPKPTGLKALYRAWSGANLADSGKDDRHVKL
PHLGYLDGMKFIAAWVVLNGTYFAATISDNDYTAIQRSSPLYIVRSTNLGWTFLLVLMGR
SLITPLWDVPSPSAPAAAGAQPKSALISWARLTRAMLVRPFRFILPVLAVVAVQWGVAAN
GDTANCNNVGMDEPYWRLVSNFAGYCTLVFDLFTTYETSTIAGQTFAGNLWTNPWFFQAS
YGVYVIHLMLGNLSSNRYWVYALIGFFSWTTYNYIFAALLGLVIADMHAHGHLHKIRTKW
PAWQRLSLHAVLIAIALVFQWVPVIRDNVNSGLATINVTDHPELTFCDAIFAACWLFCIE
TSGIAQTVFGNIVMRNLGKLSAGMVLLAPVITYTLVPDIALNMHNNGSSASSVLGVCWVA
MFGIVFALAIAFHFAVELPSKMMGEVFVELMENWNGEGFRKGGNVVKKAGGAAKLSKK