Protein Info for mRNA_3883 in Rhodosporidium toruloides IFO0880

Name: 12251
Annotation: K01784 galE, GALE UDP-glucose 4-epimerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 739 transmembrane" amino acids 45 to 61 (17 residues), see Phobius details PF11380: Stealth_CR2" amino acids 252 to 317 (66 residues), 44.8 bits, see alignment E=1.9e-15 PF17102: Stealth_CR3" amino acids 382 to 431 (50 residues), 48 bits, see alignment 1.5e-16 PF17103: Stealth_CR4" amino acids 699 to 737 (39 residues), 27.9 bits, see alignment 2.8e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (739 amino acids)

>mRNA_3883 K01784 galE, GALE UDP-glucose 4-epimerase (Rhodosporidium toruloides IFO0880)
MTARYSYASLGGPPTRSFRDSRLFDLDLAPPPPLARLRILTRPKALLATISIALLIIYVF
YNPPARRSERDNRLFAAGFDPDARFEALYEAAQAGWRPYDGAKDHEEEVNEQTWVDKLSA
TCLEDLGAQGVLCEEAAGLFRQTAVDLVWTWTNGSDPLLHRWRADVTATLSGRVRPAIAA
VRERKTANHFRQHDELRYSVRSAVHAFSPSSLRQLRILTTDLPANVLLGDVIDPLLSLAN
GSERLVSSDRLGQVPTWLDRNSSVQSPPLIVSHHTSFFEDGVVLPTFNSLSIEAQMSNLA
NLGEFLLYLNDDAFLFSDSHLTPGDVGAPLVGPVFRIQADMLVDSLPPSASIKDGEGEWA
SLQRANWLLDQRFGERRRGYLAHIPKAFSAPLLQEVGRVFHDELLETASSRFRGKATEYQ
VAFLATHYIIEAHREALLHAFFVGKSDSNADGSLSVDERRCMLLDLGFRVAGTDVSPPLV
EVPLPRRSTTANLPGQLERAGIPLPGGTLYAFSSHDGFGMFRIENAAYNEKFDHSKPIRP
AWPLDTQAPRHPACAISFAACFGEDFLAPSRSVKAEDVMRRVAYEQPQCGECAILHLVGS
SGAAGLSAFLPICDVPQSSAPSPPPTYSTAKRFDNVSLVLPSSCPSRRLAAISRILRYTY
TLGDSSSRFISMRQARLTEQVLRKMDAAAAAGEEDWPTFLTLNDDFVFAEASQAANKILH
NWFEQHWPNPSPYEARAQA