Protein Info for mRNA_3886 in Rhodosporidium toruloides IFO0880

Name: 12254
Annotation: K14298 RAE1, GLE2 mRNA export factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 PF00400: WD40" amino acids 23 to 48 (26 residues), 15.7 bits, see alignment (E = 2.4e-06) amino acids 103 to 135 (33 residues), 19.3 bits, see alignment 1.7e-07 amino acids 256 to 282 (27 residues), 23.4 bits, see alignment (E = 8.8e-09) PF12894: ANAPC4_WD40" amino acids 27 to 115 (89 residues), 29.4 bits, see alignment E=8.4e-11

Best Hits

KEGG orthology group: K14298, mRNA export factor (inferred from 52% identity to cci:CC1G_07578)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (350 amino acids)

>mRNA_3886 K14298 RAE1, GLE2 mRNA export factor (Rhodosporidium toruloides IFO0880)
MSLFSLSASKPADVEFANPPSDSVSALAWSPNADLLAAASWSNEVRVYEVGPNGANQGKA
MYSHEGPALCAKWSKDGTKIVSGGADNAARMFDAGSGQSTQIGAHDAPIKCIDWIDVGGG
LVVTGSWDKTLRYWDLRQQAPVVQVTLPERCYAMDCVYPLLVVGTAERHMQIFNLNNPGT
AFKTIASPLRMQTRTLACLPDASGYVLASIEGRCAIQYVEDSKTSLNFSFKCHRKDMAKG
SQTFGSQFKTSSQQVFAVNDLAFNSMGTFVTAGSDGTLNIWDHNSRTRLKTIVEVGGPVV
AARFNHSSQYLAYAISYDWSQGYQGNTAAQKTKIMLHPCQEDEVKPKVKK