Protein Info for mRNA_3887 in Rhodosporidium toruloides IFO0880

Name: 12255
Annotation: KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 614 transmembrane" amino acids 335 to 353 (19 residues), see Phobius details PF07714: Pkinase_Tyr" amino acids 93 to 404 (312 residues), 110.8 bits, see alignment E=7.5e-36 PF00069: Pkinase" amino acids 146 to 409 (264 residues), 211.2 bits, see alignment E=1.9e-66

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (614 amino acids)

>mRNA_3887 KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily (Rhodosporidium toruloides IFO0880)
MPIASVLKGLLHKHDNQRARDNPSSSSPASTSSSQASSRQQPQQAALPSQPEPAHLPQMS
QATQAKAEDLVRKDAEAKAKRDQSVFEGLPEGLSLGRKMGDGAFSNVFEATLRPTPAQLA
IDPSLGKSVKVAVKCVRKFELNSSQQAQGKHVGEAVKKKPRATERANILKEVQIMRGLNH
PSIVRLLNFTESREHYYLTLELMGGGELFHQIVKLTYFSEELSRHVILQVAQGIRYLHEE
KGVVHRDIKPENILFESIPIIPSKVPKHRPYDEEKEDEGEFIPGVGGGGIGRVKIADFGL
SKIVWNEETMTPCGTVGYTAPEIVKDERYSKSVDMWALGCVLYTLLCGFPPFYDESIHVL
TEKVAKGYYTFLSPWWDDISASSKDLITHLLDTDPEKRYTIDEFLAHPWCKAKPAPPAVT
PGTLDSLNLKPVPRYMPMDSPLLAPGGMRAMPSPGVAHLKEAFDVTYAVHRMEEEGRNRQ
KARGGGFLQGLNEVDEDEADEQDLEATKRRYGAEVSRAIEQKRRDLQDSSKQRGPSQSAA
EAQRAAQNYAGYGGADRKQAEAALYDGRAGARDRGTANAARRGRGGGFELALDRATLLGR
RKHDVAMPSPMRID