Protein Info for mRNA_3903 in Rhodosporidium toruloides IFO0880

Name: 12271
Annotation: K01273 DPEP membrane dipeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 476 transmembrane" amino acids 25 to 42 (18 residues), see Phobius details PF01244: Peptidase_M19" amino acids 72 to 316 (245 residues), 204.5 bits, see alignment E=1.2e-64 amino acids 351 to 443 (93 residues), 99 bits, see alignment E=1.5e-32

Best Hits

Predicted SEED Role

"putative dipeptidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (476 amino acids)

>mRNA_3903 K01273 DPEP membrane dipeptidase (Rhodosporidium toruloides IFO0880)
MKGLPLDSLESQTPTSTRANRTLRQFSFTAFISLLFLRLSSISFEDIADVARDVKWAVTP
LPKDPHKRALALMDRAPVIDGHIDLPILARWYYANDVEDTDFDLRKEVRGQVDIPRLKKG
KVGGFFHSVYVPCPEDAGYPSQNEGNFTSATWRVRDTLEQIDTARLVIGKYADTFELSKA
ARDWKKAMRRGKIGGMLGVEGGHQLGSSLSAIRAYYDLGVRYITLTHSCHSPLADSCGLP
GRDPIKPRWDGLSPFGLTAVKEMNRLGMLVDISHTHPKTASDVLTHSLAPPIFSHSNARG
VFDVVRNVPDSILRRIGSIDKSRRGPFNLSHDGEGGKGWGADTGEVDKPIPSGDSIVMLN
FSPGFVGTDADVGAMADHADYIGRLAGREHVGIGSDFDGIEAVPRGLEDVSKYPNLVAEL
IKRGWSDSEIMGLTSGNLLRILEKAEAVARSQRHVKPYYEVFSGRTDLAKHDSPPY