Protein Info for mRNA_3905 in Rhodosporidium toruloides IFO0880

Name: 12273
Annotation: KOG0118 FOG RRM domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 506 PF00076: RRM_1" amino acids 32 to 79 (48 residues), 22.4 bits, see alignment 1.3e-08 amino acids 123 to 177 (55 residues), 44.8 bits, see alignment 1.4e-15 amino acids 335 to 389 (55 residues), 32.1 bits, see alignment 1.3e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (506 amino acids)

>mRNA_3905 KOG0118 FOG RRM domain (Rhodosporidium toruloides IFO0880)
MGATQTPTVRPLLLLSCLTRRTDLRLPQTRTVYVGNLPSDASVDELLSQVRFGPIESIRI
LPEKSCAFISFLDPTTAAAFHSDALMRKIRLHDHDLKIGWGKPSAVSANVLAAVQQSGAT
RNVYIGNLDESVTEETLRDDLSRFGPIDQVKIVRDKNIGFVHFLSIATAIKVVQNLPQEP
AYAGRRVAYGKDRTAYVPKNQHQQQQHNMAAAAMGSMAANYGGFGGLGFGQNGDPNAQMG
NRTIYLGNIHPEVTTEEICNIIRGGILEKIRYIPDKHICFVTFVDPHCALAFFQMASFQG
IALHNRRLKVGWGKQSGPTSPGIAMVVQAGGSRNVYVGNIDDFETYKEEKLRKDFGEYGE
IELVNFLKEKQCCFVNFTNITNAIKAIEGIKQHADYQNLKVSYGKDRCGGAPRAFRGFDL
RNQQRGPRPNQDGANGSAPSNGYARSPFPDVMSSFPTSPLQTDQLRIAEGGETQTASPQL
PEIGALVLDEEAAAAAGATAAGQAQA