Protein Info for mRNA_3912 in Rhodosporidium toruloides IFO0880

Name: 12280
Annotation: HMMPfam-Protein of unknown function (DUF2422)-PF10337

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1082 transmembrane" amino acids 33 to 55 (23 residues), see Phobius details amino acids 62 to 82 (21 residues), see Phobius details amino acids 88 to 108 (21 residues), see Phobius details amino acids 118 to 136 (19 residues), see Phobius details amino acids 142 to 160 (19 residues), see Phobius details amino acids 168 to 192 (25 residues), see Phobius details amino acids 594 to 608 (15 residues), see Phobius details amino acids 679 to 698 (20 residues), see Phobius details amino acids 704 to 725 (22 residues), see Phobius details amino acids 732 to 754 (23 residues), see Phobius details amino acids 761 to 779 (19 residues), see Phobius details amino acids 791 to 807 (17 residues), see Phobius details amino acids 825 to 847 (23 residues), see Phobius details amino acids 862 to 879 (18 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1082 amino acids)

>mRNA_3912 HMMPfam-Protein of unknown function (DUF2422)-PF10337 (Rhodosporidium toruloides IFO0880)
MALARLSRWTHSKWTEARQQLSWARLKERPPTLWLWLGVIKQTLALCLLLILTFSNRFAE
TIPYPTALNGAVLVIVGAYPGGTMGKCFEALLLGSVGFGLGVLVYAILGELADSPTGQGF
IFAIWVYLAALVRFGGPKYISFYLYGVLFSFNGIYGSITEGGFNKQFFLANAVAYLWGMA
ISLGVNLIVWPFTAEAELRQLLVTSLQHVSTLAHLTCKTYARELDQDEVDVRQVLVKALR
SDYLALNGRLDETSFEITFSRWSLKHYRDMIKAVQGLQQALITSSSAIDLISALDPRGIN
SRHLLARSEAAKTFADFRHGIDLVIAEIIDELVGPVAIDVEPDAELAQQNETMAERQTSG
QSQAPATVDPDEQLGHALHTSPTPTAAQEKMTTVAARLKKEVLESEQRHRRIREESLRSA
SASRRGDNSNASSRPGTPGHSNLPSPRESTSDLPRGRSDRRPLDETAVPGEAKRPSDIPA
TTTDPEKAEETHTDVVQIFRKAWDAFARAQQDALVSLIKDGSIQVDDVLRIEEGMPSIKE
MYAHRLPKAWTSSLISQTPLARLRSRDGTSPATTVVEEEDAPCSDALTKAYSLLFGLGQL
TEELAILSTVVRANQRKKLRLYLFRMLLDRVKKLWGPKEDMNLQEALATLHGVEYKPVKK
PVVQKIARVERWFWQQRSIYAAKVAMATTVYSVFALAPTLQQHVFLRIGQVSALITVIVA
VAPTLGGTLSTWLLQVSGTGAGALVGLIVLEIFHNVGGYKYNPYGLVAFGALWYAWSSYK
FLQHPAKYTQSLLYVTGYSAMVIQEHLYNDEPSVRRSFDSPGLRFGFTIASLGISMAISA
VFQLFVFRQPARRRLRLQLADVLFALSSYNTMLQCFVNLVAPADEAPVPRQEALAKVQHE
LIKRESKIQASILALAPTFQFAKVEPKWWAPFKADTLLKIIRAQQVILDRLREARTAVGM
KGFNPTIHHDFANVLFPYRLHSQRLARTLFYLGATSLLSKTQLARDVPSSKPTWASFEHD
ALVLSRRMSRLPRGERELKRPGFLRYWFYLVSLGSVSTELEELEKHLGELFGDPDVSNPY
IS