Protein Info for mRNA_3924 in Rhodosporidium toruloides IFO0880

Name: 12292
Annotation: KOG1993 Nuclear transport receptor KAP120 (importin beta superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 975 transmembrane" amino acids 152 to 169 (18 residues), see Phobius details amino acids 677 to 698 (22 residues), see Phobius details amino acids 708 to 728 (21 residues), see Phobius details amino acids 846 to 863 (18 residues), see Phobius details PF03810: IBN_N" amino acids 33 to 100 (68 residues), 37.7 bits, see alignment 7.9e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (975 amino acids)

>mRNA_3924 KOG1993 Nuclear transport receptor KAP120 (importin beta superfamily) (Rhodosporidium toruloides IFO0880)
MANPPQSSDEVFQALAHALSPDQTHRQHSLDLLQRWATMPGYYSFLVSVFTQREGVPREI
RLQAAVQFKNGLDKYWRRGAPNGISAEEKDSIRPRLLEMVDERDHVLAVAVASSIAKVAG
YDYDQDWRVLPHALLSSLQTGLSHPDPATGRLVLARTLLFLHAVIKALSAKRMPRGRANM
MRLAEMLFSSLRQLYEQVLQQAVQRLQAEGLAASESDVGAPEEIESAMLAFKTLQYLLLY
GCTDSHMAAEARDFFTTSLSTFQSLLTLRLTLLQSSQTVSASPRLTFLTRHVIKFGKMYR
TLLRDFPGRFADMGVSDRILELYYQIVLGAVADVRNNVSDDVTALYPTRLVVQALLLVKS
LLGDWDGRAPLEPPEGFVEQFTDLLVKQLLPLRQDDLEKWQEDPEEWMNEEEMERWEFDL
RPCAENVLKALASVQREKVGPILVQLLQSVANPQTMDELLLKEAVYTAVGRSPSELEPYI
PFEDWLRNTLAAECAGTDPTYRIIRRRVAWLLGQWVGEDIAGSSRPQIYSLLVHLLGRND
STDTAIRLTAARSLAKCDTWDFDRTVFVPLLPKAIEEIVQLLSEVSLTDSKMRLNETLGV
VIDRLWQAADENHFQASVLVTFTKLAEALDAGSQVLQSQACPIIRYSVDPSQPAHVYLNE
DGLELWQILLRRSSSLSAEMLSLLPILVTLLGTGMDILPRCLLVLESYLLLDATAVLSLC
ANGVFTAVHDLLDGLKLEAVKVILHALNTVFQLAPPATWAGPLDASGCFAAFVKAISAND
HSALIVSKYLCSISRIILASPEAFHTLVAATASRLNATPDQILELVMTQFIERLDNLSQG
AQRKLVALALAQLVATVNPVILGRMADLVSLWSSVLAQTEESESGDADLYHYEDYQSDVE
QDWTETLETKRRQEMQRRDPIRASNLKMVIRQKLGEAQALNGGDEAFRQQWLDPSKVDSL
LVEDLVNRLEGRLAG