Protein Info for mRNA_3928 in Rhodosporidium toruloides IFO0880

Name: 12296
Annotation: HMMPfam-Fungalysin metallopeptidase (M36)-PF02128,HMMPfam-Fungalysin/Thermolysin Propeptide Motif-PF07504,PRINTS-Fungalysin metallopeptidase (M36) signature-PR00999,SUPERFAMILY--SSF55486

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 873 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF07504: FTP" amino acids 144 to 182 (39 residues), 34.8 bits, see alignment (E = 1.2e-12) PF02128: Peptidase_M36" amino acids 422 to 826 (405 residues), 518.7 bits, see alignment E=9.8e-160

Best Hits

Predicted SEED Role

"Metalloprotease MEP2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (873 amino acids)

>mRNA_3928 HMMPfam-Fungalysin metallopeptidase (M36)-PF02128,HMMPfam-Fungalysin/Thermolysin Propeptide Motif-PF07504,PRINTS-Fungalysin metallopeptidase (M36) signature-PR00999,SUPERFAMILY--SSF55486 (Rhodosporidium toruloides IFO0880)
MTLRTRTHRTRSHRLAATASLASLVSLGSSLVVPPSADTLARASLASLSSATGESSIRKS
INFGPTVHARTHDDDVNPSPALSVWNANHFAAKHPIAAHCSSNAQESPVDLGRCIGTELA
KSFVAHLHPDADFRLDSALLSKHSGVVHAHFTQVVNGIPVANGNLNVNVDLSTGKVLSYG
DSSLAASHANKPAVARSGGRKFDWKQRVKSWASDVVDRVDSGANQVVFGGAAPSHETGSR
LLSHADAAEPREGLLTFLAIQSSTVQLSQALESTPRPHLVDAMTIHQQVGGDSKHDLEID
THLAGVEEPVKATMCYVHDGKDIRLAWKYELKTQDNMYEAYMSSDKSVAAGDEEPLLVVD
WVRDFKPTGGELGVEAVGLVGSRAFLRDDAVVNAAAVKTASHPTASTTDEKLVAKMRKVQ
PEYKVFPWGVNAPDEGKRSLLTGTLVEMDSEASPVGWHTVPAGKDYSSHSKDTFYFETRG
NNVLAQDNPSGGNSMDGFRANGGEDMSFKFPIHMTKAGTPLDPTSYINASVTELFYTSNE
IHDLYYRYGFDEDSGNFQEENFGRGGRGGDAVQANAQDGSGYNNANFATPPDGQRPRMRM
YVWNAQQPYRDGDFEAGIVIHEYSHGLSTRLTGGPANSGCLGWGEAGGEGEGWGDFLATM
IRLHDTNVTDYSMGEWASNRAKGIRYYRYSRNMTENPSTYNFLSRPGYWGVHAIGEVWAE
MLFELAENLIDKHGFHPTLFPPAVNGTDSTGFYSERHLLQSGKKVPAHGNTLAVQLVIDG
MKIQPCRPTFQNSRDAIITADKALTGGENECIIWQSFAKRGLGPNASLVGSTPWGGGVRK
EDYDVPKRCVEKKEPKGGKGKKDRKDRQKPALF