Protein Info for mRNA_3935 in Rhodosporidium toruloides IFO0880

Name: 12303
Annotation: HMMPfam-ER protein Pkr1-PF08636

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 115 transmembrane" amino acids 29 to 50 (22 residues), see Phobius details amino acids 57 to 79 (23 residues), see Phobius details PF08636: Pkr1" amino acids 12 to 81 (70 residues), 89.5 bits, see alignment E=6.5e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (115 amino acids)

>mRNA_3935 HMMPfam-ER protein Pkr1-PF08636 (Rhodosporidium toruloides IFO0880)
MAQTAHNDRPGIFADLVNSIFTPGTNSGLVAAMNYSFYALFATLFGMLVLTRGNGHVLAM
LGLSVALWASIRWFLVAIADAEEQQRRERLEKEREEVSKGGGPAELAAGDCKKDQ