Protein Info for mRNA_3943 in Rhodosporidium toruloides IFO0880

Name: 12311
Annotation: K10843 ERCC3, XPB DNA excision repair protein ERCC-3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 972 TIGR00603: DNA repair helicase rad25" amino acids 199 to 955 (757 residues), 1183 bits, see alignment E=0 PF13625: Helicase_C_3" amino acids 214 to 336 (123 residues), 126.3 bits, see alignment E=2.2e-40 PF04851: ResIII" amino acids 470 to 626 (157 residues), 62.8 bits, see alignment E=1.1e-20 PF00176: SNF2_N" amino acids 497 to 629 (133 residues), 37 bits, see alignment E=4.5e-13 PF16203: ERCC3_RAD25_C" amino acids 652 to 881 (230 residues), 409.5 bits, see alignment E=1.1e-126 PF00271: Helicase_C" amino acids 699 to 802 (104 residues), 45.5 bits, see alignment E=2.2e-15

Best Hits

Predicted SEED Role

"Transcription initiation factor IIH p90 subunit" in subsystem RNA polymerase II initiation factors

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (972 amino acids)

>mRNA_3943 K10843 ERCC3, XPB DNA excision repair protein ERCC-3 (Rhodosporidium toruloides IFO0880)
MNSKRAQDAGYSDSDSTASGPAPNRARRAAAAASAASTSATVEVGSSDSEESDEGKNPDR
SYKVTRQEKAAEYESDYDIDDAEVDEVEDEGQEEEDDFVPERRGGGSAAKGKGKAKAKPK
PAAKGKGKGKGRAGGTPAPAAGDGSSGGTKIKFKFGGGGAAESASTSATMPTLKTPGVAV
SDAAGALVSSNFRQDRDYGYLPLRPDQASRPFYIVPSTGHIILENFHPLAKYATDFLVAI
AEPVSRPKYIHEYKLTPHSLYAAVSVGLETENIIEVLNRMSKVPVPDELCEFIRECTHSY
GKVKMVLKKNRHYVESSDPETLRILLRDEVIAKARVPPEEQQQADKDGAAPTATFGLETA
KAPTKAGLVIPGTSKAGPQDGQAGANGEAGKDKPQRTQEEEDLFTAVVGLEKEDDMDDDD
EVHSFEVRESEIEAVKRRCLDLDYRMMEEYDFRHDEINPTLEIDLKPSAALRPYQEKSLG
KMFGNGRARSGIIVLPCGAGKTLVGITAATTIRKSCIVLCTSSVSVMQWRQQFLQWSTIK
ESAISVFTADQKEKFTGEAGIVVSTYSMVANRQKRSHDSQKMMDFLTSREWGFILLDEVH
VVPAAMFRRVVTKIKAHTKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAENGHIAK
VQCAEVWCDMTPEFYREYLRESSRKKMLLYCMNPRKFQACQFLIQYHENRGDKIIVFSDN
VYALEAYAKKLGKLYIHGGTPQVERMRILQNFQHNPIVNTIFLSKVGDTSIDLPEATCLI
QISSHFGSRRQEAQRLGRILRAKRRNDEGFNAFFYSLVSKDTQEMYYSSKRQGFLVDQGY
AFRVITSLDGLEQLDNLVYPTKAEQIELLQSVLLASETDADVGGDEVSKAPSGAASGYNS
PAPGRRDGAPQATRIAGSLQALSGGQSMAYSERQKSANKQLSKEAKSNRHNLFKKRDEAA
KKRAKDRASGNL