Protein Info for mRNA_3949 in Rhodosporidium toruloides IFO0880

Name: 12317
Annotation: BLAST transmembrane protein, putative [Rhizoctonia solani A...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 627 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 63 to 87 (25 residues), see Phobius details amino acids 154 to 178 (25 residues), see Phobius details amino acids 186 to 207 (22 residues), see Phobius details amino acids 224 to 243 (20 residues), see Phobius details amino acids 255 to 275 (21 residues), see Phobius details amino acids 284 to 310 (27 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (627 amino acids)

>mRNA_3949 BLAST transmembrane protein, putative [Rhizoctonia solani A... (Rhodosporidium toruloides IFO0880)
MGTETAEDALLSALVTGVARATPSPALSSLAAAFEMAVADNATDVADQLEDPLLAALPAF
TYAMPVQVVILGVTLTLLAMLLVHLLFTIRYHAPLSKANYALQTTAAVLSLCNTAAQLRI
VMHDVYETGRERPFMFDYIEVNFPKDSWSTAERAAWLLLQGLNALAVHATHIQFLTMLFP
SALEVRLIFVLLGPLAFATAGLVYTTMSVHPAVNDLGDAIRNTCNSSLTLLYTLALWIWG
LTLNRSRAWRTEGGTASFGIVALVLGVLGTAVNFVEIKEDRMRWLPGVVTCILLWQSWVG
FWWWVGAGMWAGEAEDVERRRDKQRRKEEKRQRKKEQQQRRAAAETGEGTGARSTVSSLR
RRFARTDTLATDASGEAIELRDLGTTTAGGAEATPAEDASPTGAASEGRRRATGDRDGRS
SDSNSSTLSSSRPSTQHFYDPLLNLFVPFLTRLRLAHDAAAVAQAAKPPGLPEDVRRGWG
MRAMMMRGRKERGERRQAARGRVRPGAEMDAAERRAGFELDGGARLGDEGGAVRAGEEEW
EDEGTVSTAETTTGATSSDRRPARSPQRGASTYPPTRPTASPTAGRVPRESGEEPEENWA
GRGLEGQSGWWWRGWIDRWRLKDVSQW