Protein Info for mRNA_3951 in Rhodosporidium toruloides IFO0880

Name: 12319
Annotation: K02967 RP-S2, MRPS2, rpsB small subunit ribosomal protein S2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR01011: ribosomal protein uS2" amino acids 106 to 315 (210 residues), 101.2 bits, see alignment E=2.6e-33 PF00318: Ribosomal_S2" amino acids 111 to 319 (209 residues), 180.3 bits, see alignment E=1.7e-57

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (384 amino acids)

>mRNA_3951 K02967 RP-S2, MRPS2, rpsB small subunit ribosomal protein S2 (Rhodosporidium toruloides IFO0880)
MVRAAASVARAASACTRASRAQPSRSVQTDAAAPSSPAPAPDQPTFVSRSQREHEAAYKA
LLEKVQQRRIQRYNAEVFEKLGSTQNRHTTFQPHHNISRPPTPVSVTASHLVAAGAHLGH
SKANTHRASLPLIYGTRAGLSYIDIRQTLPALRRAAQVLKGVVERDGRVVFVGSLKGTEK
AVFENAKRLGENGYGVTKWLPGTISNAREVFKWCAVPQPKVTEEEQRAYEKRRGGRPGRP
LTPQKVTPLSFKPDLLVLLSPTLNEHAIREATQNEVPTIGITDTNLDPRIVTYAIPANDD
SPRAVELIAGILGMAGKDGLAAKEARCVSTPSFLASTRNLPSLVSQAQAGSSGAAVPRRT
AGPVERGGSRCSSSRSATRRSSSI