Protein Info for mRNA_3954 in Rhodosporidium toruloides IFO0880

Name: 12322
Annotation: KOG1426 FOG RCC1 domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 633 PF00415: RCC1" amino acids 75 to 149 (75 residues), 26.3 bits, see alignment E=1.4e-09 amino acids 153 to 205 (53 residues), 26.3 bits, see alignment 1.4e-09 amino acids 208 to 269 (62 residues), 31.3 bits, see alignment E=3.8e-11 amino acids 272 to 325 (54 residues), 39.8 bits, see alignment 8.5e-14 PF13540: RCC1_2" amino acids 137 to 166 (30 residues), 29.1 bits, see alignment (E = 1e-10) PF00628: PHD" amino acids 546 to 595 (50 residues), 45 bits, see alignment 1.3e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (633 amino acids)

>mRNA_3954 KOG1426 FOG RCC1 domain (Rhodosporidium toruloides IFO0880)
MAAPTRIEHPWGRLLIAGGTDFATLGRKDKSGKNVVNPLRPDLPAAHIVRNVANIKFTRV
FTSHSGAHAVALTLDGQAYLFGRNEHHQLSHRLPASYTTPQLGSDDLPSSTPAAPFPFPL
RSLPDSNCPPALKAQKIVHAACGRGHTLLVTESGEVWSAGWNVVGQCGHSEEREHVSSWR
RIKGGGIEEEKVVMVSAGTNHSVLLAESGRVFAVGTGEKGVLGNGKTGEHITGSRVLFIV
QSEPLLVEGAIKGKKIVQITSGQQHIVALDEDGYAYSWGFGGLGRLGLGAQIDSLTPSLI
PYFSGSNVLTRCKKIAAGSTNTLFIDNQEGVLLCGKWKTSGDGSAGQPWMQPRYVQDIMG
YKCTLISSGGVTLFVHANDPKEGEFTVSWGQNAQYGELALGQGAPKSATKPQRIEYLDGI
EMLDIAAGQSTTFFIARPPPTQAAKDEAKALIEARTPPPAAPAPVAAAPAPAAEAPAPAI
KPTFDISGFGFSFGSSASPLPSKPSSPTPSDSAADKKRAAGISRTQQGAWEELARWPMVL
ETTDNCRVCGGYEADEVKGEILECEKCEGAFHAGCLNPPLQGIPDGEWFCPDCDVEPTAA
AAAEDEEEEEEPVQAGKKRKAGGAAAGTGKKRK