Protein Info for mRNA_3959 in Rhodosporidium toruloides IFO0880

Name: 12327
Annotation: K10401 KIF18_19 kinesin family member 18/19

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1134 PF16796: Microtub_bd" amino acids 153 to 264 (112 residues), 80.9 bits, see alignment E=9.7e-27 PF00225: Kinesin" amino acids 159 to 448 (290 residues), 364.4 bits, see alignment E=5.1e-113

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1134 amino acids)

>mRNA_3959 K10401 KIF18_19 kinesin family member 18/19 (Rhodosporidium toruloides IFO0880)
MRRRETLGCAPPPISHKLTFAGNYAETAGETQYTRHTLPRNRAPPPTLLSPARLDNQSTS
ASSRLMSSSISVAVRVRPFSDKERSLVNAGYDAGPTLFSADSAASGSSASSFSTSQPSRG
AGGIRKIVKVLDDRILVFDPPETNAVASLQQRANMPVFGKKQKDIRFCFDRVFDEDCGQE
EVYDGSAKELVGHVMDGFNSTVFAYGATGCGKTHTISGSSTQPGIVFLLMKDLFDRISAA
SDEIHFSLTVSYLEIYNETIRDLLAPENGVLQLRDSSDGTATPANLTTKEPTCPQDVVEW
ITLGNNNRTVNFTEANATSSRSHAVLQVTVMQKNKASGLTDTSTTACLSVIDLAGSERAS
ATKNRGDRAVEGANINRSLLALGNCINALCDPRKRGHVPYRDSKLTRLLKQSLGGNCKTV
MIVCVSPSSVHYDETHNTLQYANRAKEIKTKAVRNTLTADRHVAQYCQQIMEQQAMIADL
KRKLSEQETRSTVAQRAEDDRLVQSALRQVAAPWETGKTKRVAAARAGAEKDVLDNVLRV
LQQWQLSATANVDVGSPAASSSAVAADSTISLLKKESQDLIADLLSTTASLAFEVSQGGP
NAMEAYSRTVSSVSAPLRDRPAALSLLTAESKVLDARLDAACADARAQGLRQGLAVQTAA
MRRMLEARLKVGVALESAQEGGSNAVRALARLAQSVDKANNEAFAAFAGESSSATYPSYG
AAGIKRDAGARSPFLLDPNGKVPRSALTGFGSAPTGPYASSPSRARRSPKKGVSFPSGAK
RVASPGAKKNKVQWRDEVGEEGLEDIKYGSPVGSTDSGSSSSTPAIAVTSPRLSSSTQMW
MVSSTYSEASEAAKAAEEMQSALRAKRPTATRLRTTLSTVTESPSPFSFHSDQSMPPPPV
PSSSASRPPFADLANNSMFSETSFSMAPTASGLVAPVISKPIPPSPAPPTPSFKLRRNSH
IGPVRSDKAARRVSLSSRPRSSISLAPAAADTSLSSSAGSLPSATPSTFRRPGRIVSAPA
LAPPSFAHPPGSARRSPRKPSLRPRVSLMPPTNRRLSTLPSAGSGAAALAGMQPTTPAPV
MFGAKSAARIAARRESRLSGGNSSGGANTSGSGSALLAGIVGATKKDSPSGVWR