Protein Info for mRNA_3963 in Rhodosporidium toruloides IFO0880

Name: 12331
Annotation: HMMPfam-Domain of unknown function (DUF4504)-PF14953

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 229 PF14953: DUF4504" amino acids 108 to 187 (80 residues), 36.9 bits, see alignment E=1.5e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (229 amino acids)

>mRNA_3963 HMMPfam-Domain of unknown function (DUF4504)-PF14953 (Rhodosporidium toruloides IFO0880)
MGPAVPLPEKLLKAVQRALPRWNRRRCATLAGELSTLWWGLRTAVLLDTCSLEEDEAAAL
GTALQAVQKNVFVAYEPVSGQTLALDNPPTSFHALLTSLSAHSPSSPSPCLTLPSPDHPT
NLIPLVGFLLDYPVAYYLSHERGGRNCLGGEELVVTEAELVEPGETRQRLLAFSYPARLA
KSISSEATAKALEDKLRARLASGITIHPELRGCRIDVAQRNVTLDQVAL