Protein Info for mRNA_3967 in Rhodosporidium toruloides IFO0880

Name: 12335
Annotation: KOG1972 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1124 PF08424: NRDE-2" amino acids 255 to 584 (330 residues), 280.3 bits, see alignment E=1.1e-87

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1124 amino acids)

>mRNA_3967 KOG1972 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MTGDIARKSGNSGIETKTVRDGGGAGTGENRKTPHDLVLATLSADSTPGPAQLSEPAVPD
TDKPVFYESRRGDPNNLRYGGLHRGDVPKYRRVGAGKVIGLNDGLRITRETAYSGRGVEI
APVNRFKTPRYVDPASLRHLTDKNAKRLILRPAQPKEPRAVGAPGTPPAASFDPFQPSAD
ENGLTTEYVALERERTTAEKLDKLEHEEGTDYRSIAGLVKSSDLAESSDDEEADDLFGGL
GISGGESHADYLKRRNLELDRALRDDPSNVDKWIEFVDFQDEVAQSSFVGASASSAAKRA
LSKAERASTSEIKLAILERALAHPGNANSERLILAQLRAANDIEDPKRVLERWKEALMAH
PDLTGLWIEYVSWRQTTWSTFNVKDVVDVFEESFVVLGDAMSGEEAGSSAREMLEANAVY
LLLRFSERALATFQAIVELNLFRPADFDRLQYERFMPWKQRVLAAFESFWDAEAPRIGET
GAKGWRSTTDEDMPPEAVPASDVAVVEAQREEGARPHERWARAERIACESHRPARTTDPS
IDDSDDPYRVVLFDDIRPFLFFVDSPDSRLQLAYAFLTFLGLPFVPPDVPTSTPFTTDPF
IHSELVERPSLIQRFWPSGSSEKQSFGLVGGEPMELERKSDIKEPWQTPFKAAPAMADLL
FGSGKAGWFRTLVPEDLQDVDVELAKNALNLLRTVSPDIFLTLDAFSLETAQSPKSAVKL
AKQVLRDKRQDLALWDGYARIERSRGKVADARQVYCTALSMYRSFTPQDQVDGPLLWRAW
AEMEWEEDRPALALRILVAATSAEKVDLASLAAMTDVERPSPATLLRARQYYTRELEASF
QPRATQALLRNRNHLAFSLALFEYVSRGLSAAVDVLEQHLLRLDGAGASGTAEHEESFVL
YAKLLFRHSSRGKGYKPGQLRELLDRALQQYKYNTLFLSLAYHNELRMKIQNHFRLVMEE
KVLKENEATSESWLFAIVAELHLDARRPNIWAVRNLFDRALDNPNTKSSPSLWTLYIDFE
VRNGELHRAKSLIYRAIRECPWCKEFYLRPFSPALRSVYRSRELRDFHHLLLEKGLRVRV
DIEPFLEGAVTSDMEDDEEEEGEGPMLEDAGEALLAERRRLMPY