Protein Info for mRNA_3971 in Rhodosporidium toruloides IFO0880

Name: 12339
Annotation: K02964 RP-S18e, RPS18 small subunit ribosomal protein S18e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 PF00416: Ribosomal_S13" amino acids 17 to 145 (129 residues), 182.7 bits, see alignment E=1.9e-58

Best Hits

Swiss-Prot: 76% identical to RS18_BRABE: 40S ribosomal protein S18 (RPS18) from Branchiostoma belcheri

KEGG orthology group: K02964, small subunit ribosomal protein S18e (inferred from 88% identity to scm:SCHCODRAFT_85470)

Predicted SEED Role

"SSU ribosomal protein S18e (S13p)" in subsystem Ribosome SSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (155 amino acids)

>mRNA_3971 K02964 RP-S18e, RPS18 small subunit ribosomal protein S18e (Rhodosporidium toruloides IFO0880)
MSLVVPEAHVQFQHILRLLNTNVDGKRKIMYALTEIKGVGRRYANLVCKKADVDLGKRAG
ELNPDELERIVTIMQNPLQFKIPQWFVNRQKDIVDGKYTHLLSNQLDSKMREDLERLKKI
RNHRGLRTYWGLRVRGQHTKTTGRRGKTVGVSKKK