Protein Info for mRNA_3973 in Rhodosporidium toruloides IFO0880

Name: 12341
Annotation: HMMPfam-Flavin reductase like domain-PF01613,SMART-Flavin reductase like domain-SM00903,SUPERFAMILY--SSF50475

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 PF01613: Flavin_Reduct" amino acids 84 to 244 (161 residues), 64.6 bits, see alignment E=5.9e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (283 amino acids)

>mRNA_3973 HMMPfam-Flavin reductase like domain-PF01613,SMART-Flavin reductase like domain-SM00903,SUPERFAMILY--SSF50475 (Rhodosporidium toruloides IFO0880)
MGLTSGLQVEASRPDFDADEQWRVTKTVSPDWIPGTGANGRQDLPGVKEGLWDGKKQEAA
KFREVDPAKENKGGLYKMMISAVTPRPIGFLSTVDAQGRTNLAPFSYFNIACHDPPIVMV
AFTHPNGQELKGTCENILETKEFVANIISEPFVEAANFTSIDAPKGVSEWPLSGLTPVPS
KLVKPARVGESAFVMECVLEHHYHLHNDDGVRTGTVVLGRVKLFHVRDDIIDDTLLVDTG
KLQPVSRLGGITYGRTTRAYEMPRPVFDKEKEKEEVKAILAKV