Protein Info for mRNA_3974 in Rhodosporidium toruloides IFO0880

Name: 12342
Annotation: K02350 POLZ1, rev3 DNA polymerase zeta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1997 PF03104: DNA_pol_B_exo1" amino acids 146 to 283 (138 residues), 51.6 bits, see alignment 1.3e-17 amino acids 1170 to 1334 (165 residues), 24.7 bits, see alignment E=2e-09 PF00136: DNA_pol_B" amino acids 1421 to 1867 (447 residues), 323.7 bits, see alignment E=2.9e-100 PF14260: zf-C4pol" amino acids 1909 to 1979 (71 residues), 44.6 bits, see alignment (E = 2.4e-15)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1997 amino acids)

>mRNA_3974 K02350 POLZ1, rev3 DNA polymerase zeta (Rhodosporidium toruloides IFO0880)
MLSIQMCSWTSLDVSWGDLLDPLLVVTSSKLTSRLDHFVSPLAPVARLLLYLRRLFCALA
MTGTTAEPPNGAAASSATPQQATSTGQEAGGTAAPTVPLEDCFIRFRLSAIDYIQAPDRS
KYDNRRSPFAKDDLRAVPVIRIWGATDRGQRVTAHVHGAYPYVYVDYKGKLDPESVNEYI
RRFGSALNRAMELSLPSKHKKGQSPQYVAFVVPCKGTHFYGYSVGYKPFLKVYMVNPRHK
NRLSELLRSGAVLQTQFDVYEAHIPFLLQFMLDANLFGCGWVETGECAFREELPDYQPTP
SDEYNPPSCSGPYAFRTYTTRTVPPSRMHPSPDAGGPVKVSYCALELDLPISAILNRRRL
TPRNLHHDFIELLHPERVERGKNVRSVRELWEDEQRRRAATGESGPFDIVDNVPRAFDKR
PPTDPIWRREPEFRRKVAQRVEEDLRAFREKVGPKGRGAPEFETYVEDKEKFVEQSGSWW
MERIRTTFEQVDAVYIERFLEDEEKNYPFGAWAVRGFGLNVTEAQEAAWLHAGRTEVDIN
RLHASQAAAKLAARAARRRRQDPRLADEDDDDGMEADSDPDADGSDVDDGRQPPATQAEA
LARSRRTMDRAEQRGREDSVQEGEWEKDADEEEDEEDYWGINAGTDRLPADGSLDGRSAY
SVSPSVSPTKRTLVSPEQARSRAGSVAAASTDDSDSAPPTKKRKVDDSTLTRPASNGGPF
GRQAASFQSTGPRGLSPSKGAATAQPARSSPVSRSMSRNGSTPAVSPSKRSKHNPFASPN
KGVVVRIAKSASNAPSPQNASPLAEEAPEVLFTFRAAAAVGDESPSKPVGASHSSETRSS
APPLEYFLQSSAEDGSPTPPERMRSAMTPSQAVAELADLPDDAFDEDYQPTPTIKEEVPS
QVPLELRSSPGLLRLIANGSNSSARADPLEASESEQEEDVKPQLEVEQPIKKHVAFADPH
ASPTVSASPPRTLTPANSTAESRRLQPSLADHTSQQTNESDPTTVAPPPPPRKDYPQARH
TFTYSAPPPASYQLLQTIESYGQPTFRYKDPHYSKPADVPRKAREYGGRSFRLYGTTVKS
LPPFVHCDGARRVPSEEDGRRKRRIRKVKTWETAKRPPTLADVRAWLEANGAASAQAKKP
RFNPIKSQIEGPTQKSEKFTATKGAATQREKQHMAVLSMELHVNTRDDLLPDPKEDAIEA
IFYCLQSDNEDLDANGRSANTHVGVIAVGTDDSYRVLGITDYGLEFVEDELTLIGTFLDK
LRDEWDPECVAGYEVHHASWGYLLERAEARFSWNLVPELGRVKYGDTGRFGNAQTDRWGF
NQSSTLNFTGRHVLPIWRILKADNKFQQNSFEHIAFHVLRERTPHWSFRVLTEWYTSDDP
AKIAKVFQYWRNRVEMNVEMIDAAEVVDQCCESARVFGVDFNSVRTRGSQFKVESVMFKI
SKPESFLLLSPNRVQVGKQNAAECQPLIMEPKSAFYKGPLLVMDFQSLYPSVMIAYNYCY
STCLGRVHDFKGSSKFGTSEINLPAGLLQLMKDDITISPNGMMFVKPRIRKSLLAKMLSE
LLDTRVMVKSSMKGVEGDKALTKLLNARQLALKFLANVTYGYTSATFSGRMPAVEIADAI
VQTGRETLERALETIHSVKEWGAEVVYGDTDSLFIYLPGKTKDEAFRIGNEIADVVTSQN
PRPIKLKFEKVYLPCVLLAKKRYVGFKYEYKAQKEPDFDAKGIETVRRDGIAATQKMQET
CLKILFRTSDLSLVKEYCQRQWKKLQAGDVSPQDFVIAKKVKLGSYAEGRLPPPGAAVAA
RAMLEDPRAEPEYGERVPYVMFQAEPGQKQVHRAIAPKEFLADPRLRLDATHYIERMMIP
PLERIFNLMGADVTSWYREMAKSKRVHRIADGKGGRAAMLEQHFKSNRCVACDGPHGENG
LCPDCRAHPTEAIYSLSGRKQALLQRQRALHQICVSCSSNPLLEAIACDSIDCPNLYSRV
RNSNELAKLADPSTLVF