Protein Info for mRNA_3975 in Rhodosporidium toruloides IFO0880
Name: 12343
Annotation: KOG1938 Protein with predicted involvement in meiosis (GSG1)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1515 amino acids)
>mRNA_3975 KOG1938 Protein with predicted involvement in meiosis (GSG1) (Rhodosporidium toruloides IFO0880) MASQTTRYSPAALVQPHFSPPVHLFATPDLQASLERNRIPSLAAFLEPFLGTGLERVQVR KPSNYDQHTLDRLGTHLVDRPLPPSFLAASQGTPAVGSSRARSGSVFSPAVQGSLATPST PFVYPSQAERDALFLDSLGESVARKVDAWVGEPGRRELRVKAGVRIPRSFADADEGTDPV PKEADDEGWEGKTAEELCPWFEEVKREVYRRREMVEWETFGWPVACILALSTSHPDPLNA LSSLWDLTSPASLFSPSSYPPRSGTEEDGRHDWANAGDVLRFVVLVHDQGRGGGKEEWDD AQRLHETIRKTYGLHTALVPLFSASPGAQNPHPPAPSASAMWDFLGPVGGAARQAEKIVG LGVDEGFDVEPTAPPPPIDSTPRASELSEIDLSALTSFSREFLLQSLVPHLERLAVVGHE SWQQSRRGFFSAAAAIGGGKLWGAVGRRLGGGSGEASRAGSPGPGGAAGKDGYNAARGYY HHTSTISQSRRLADLAFILEDYKLAQQVYESLVKDYRQDKAWRHYSAATRMAGLCQLLQL SPPAPPHAAPPALPSGFNPDHNLLLALQTPLAASTPAVGDFDSLRSTLLYYDLYRLLSLA HFAPHALVRTAGEVEEVVSAVLLEQAALAEAMGGGRKRRRKYAFCMAMAAARYEKCGIKS LSRRCLSQASTVFRPLPIYPEASMSDSTPPPPALTSLLPPLLPSPSSPPAPWLSIRTHIH HSLARQAYTVGSAFEAIDNFLQLLVGADSASTAAGDAGGDGVDWLDDFALAFSLLGEPEE AARRVKERGISLPVKLFDAQTARVKVGSVNAAGASASGGANVAEDEKIWKAMTDEMLRLG EWATDEGGKKVRPRALVYRGEGLSTSRGAAGEVEAVIGETVYLEVPVRNPVEAFLAIGGL EVEVDGDAQVEVMAPQEIELAPLEESKVFVPVKVASLGSFTFRSLSYRFSNLLPVTENLL ARYSKPSPPAPNKPSSRTPIPLKVHVRAPVPVLSVELDELPQKLFHGEMRDAQIKVVNAG QVPLADLHLACSHPGFVYLDSATTPVLADNLLACDNSLSPLPPFSLLPNNRTLAPGDSLS ISLKYRGDLPGAHAIRWLFAFRSSEQDADEYFSTRVVRELEVYPSLELRYQIRPNAKEEG APFLLGIEAFNCGLPADDVRLNSVSLVSPLWRIASEMTFDFHEDVVSQTIGWQQSTRFLV GLDAVDNEQREAAEQVDNWTVGQVAALLDGRELKAERPAAISLVVSGLSNSAMPAPTSTS LLSSYAQYRRASLVPRFPTVDPASHPNIFPLFSSRSALLVVSYTSASLSVGPQTAQLVLP LDAPLLGTTAGSASTARLLASLEAAERIAGGLYEESQRERSALLSSLRRSELAGASGGTP IAVAVHARAIVDHDFDQGPLSLPVTVVLRNLSPFASFDYALQLSSGAHAVIAGALVHKGS IGPLQAQAVRSQLWLTHEGVVSAAAHRLSVRLDGDADVRWMVEGPAREITVRQTGRAGLV DGSLATAHRTLVDVR