Protein Info for mRNA_3978 in Rhodosporidium toruloides IFO0880

Name: 12346
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 379 transmembrane" amino acids 320 to 343 (24 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (379 amino acids)

>mRNA_3978 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MTRAPSYRSSYHDPYDELDELPTYPDEQAAFPPRPKSLNGEAKKDGLMAGGPMTVDQFAY
EIGRLRNEVEKLPASTARIADLRAQALALDPADNSLVAQSLLADLAVQTSAVFDVLPSHI
AETRSFASKVAVLKPAAGRFLVTAGETAELKAELARCALSLDSAIQQISDGAKAEEKNKQ
EARVRLLKVIKAKLGDRGTDAEQMSLLLTAEREGTAARPEKLKPGSFGWRWSVEHPFTRL
EQAVKNSGDLSFLSALKAAPTPAPSLWANPLSYIPSLTSTSKQPTGYVPPSATDTSLTAA
EEGSYGSPLNPPPAKPSSKWIKWVFLLLVLVSIGAAAGVIVYLGKRVDEHANGGEEAEAA
AATPTVILGAPGHAIPLRL